PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0046s0103.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | SBP | ||||||||
Protein Properties | Length: 745aa MW: 78665.8 Da PI: 7.4392 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.2 | 3.7e-41 | 293 | 370 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dl+ ak+yhrrhkvCe+hska+ +++ g+eqrfCqqCsrfh l+efDe+krsCrrrLa+hnerrrk+++ Sphfalx0046s0103.1.p 293 RCQVEGCKTDLTPAKDYHRRHKVCEMHSKASRCIAGGQEQRFCQQCSRFHVLTEFDEGKRSCRRRLAGHNERRRKPHP 370 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-34 | 287 | 355 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 33.189 | 291 | 368 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-38 | 292 | 372 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-30 | 294 | 367 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MAMAVDGTLE HASINVETQA PENCWSTTAW EEHHQAAADS GSMEGSGRGG GDYSTGRMEW 60 DLKPNPWEWE NIAMVYPPNG GGRQGDGGGG GSHNTRIQVS SSEWGHVVCG STTMVTATSS 120 PAALKNSDFS IGLPSGSSTP PSGVSSVSSG IPGLAASRGN NTSHNELSSL VKSEPDEPIA 180 SRTSENNASE QQRRLFLGLG GVQAGDLDNG GVSENGGGKE TMLLDGSGSS TPSAKGGDAF 240 IGLKLGRQTY FEDSAGAAAA IIVGQKVATT AAPVFSPPGK RQRAMSPGMQ TPRCQVEGCK 300 TDLTPAKDYH RRHKVCEMHS KASRCIAGGQ EQRFCQQCSR FHVLTEFDEG KRSCRRRLAG 360 HNERRRKPHP QSHTALSIKA SSPLHSDSNT HPSGFTAKDN KRSIFLQHPR RPASPSASLG 420 DDEYASPFAS SLKLSPWPRV GQQDDNRLAC QLQASGVDRQ SILSTLLCPT ADRLLMLLQS 480 PKGQIAASSP CTTEMAIGSC QFMEGALSSL GQGLSLSSSS GGVLGGLEQT RMAAGSQGLS 540 SISARDSGRA LSLLSSQSRV SRPPLHLPAQ DLPQVNTTLE QFVAGNSEGN NHSTSFSPQL 600 QLLPTGRTTP QQQQRYAGVE KLLSCAHTSS GNRSMDKNVE NSGDRHCNNS SDNFISALDG 660 YDRSHSMLTL FQTGQQFGGF SSGTAANTRP TIDLMQTPSA QVQTLQNGSN GGGQSQSLPS 720 SNGYSEYSPM RHFEASMFSS QQML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-30 | 294 | 367 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 88 | GGRQGDGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024398584.1 | 0.0 | squamosa promoter-binding-like protein 12 | ||||
TrEMBL | A7TTY4 | 0.0 | A7TTY4_PHYPA; SBP-domain protein 13 | ||||
STRING | PP1S194_57V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 2e-42 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0046s0103.1.p |