PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0046s0102.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family SBP
Protein Properties Length: 735aa    MW: 78244.9 Da    PI: 7.8668
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0046s0102.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.81.3e-42253330178
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                           +Cq+egC+adls+ak+yhrrhkvCe hskap+v+++gl++rfCqqCsrfh l efDe+krsCr+rLa+hn+rrrk+q+
  Sphfalx0046s0102.1.p 253 MCQAEGCKADLSTAKHYHRRHKVCELHSKAPTVIAAGLTKRFCQQCSRFHLLAEFDEGKRSCRKRLADHNRRRRKPQP 330
                           6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.2E-36247315IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.616251328IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.94E-40252332IPR004333Transcription factor, SBP-box
PfamPF031104.9E-31254327IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MNPSANTNEH QGDPGPNWST ENWDSPGVVG GTLEHASRQY PTNRLEWEWD PMILATQHPG  60
SGSSNEAAVP GDAAHGDHKT QQVTAGQISS LRAYSHMISP GLPANFSHNA ATLGIFGPAG  120
MQNRHHHHAY GALDGSAGAA VLSVATGGGS HLHNSLQGSS GIPGLAATSG GLHVGDMQTA  180
FEQQQQQQRR DHYFASGIHE HHLVKREDVS DGHTAPRIGL NLGVRTYFSA EDTAVGRLAK  240
RPCAGPPNTQ VPMCQAEGCK ADLSTAKHYH RRHKVCELHS KAPTVIAAGL TKRFCQQCSR  300
FHLLAEFDEG KRSCRKRLAD HNRRRRKPQP GAVSTTAAAA AGTSAENISI KTGTDSESSC  360
AVNGASYGRG AVHGDSSHQS PHHHHGMQQQ TTSSMKGPDP HQALLSAMSL STSSVPLMLH  420
NAKRQMSMMP GSSSSSHAHE AATAAYQHFL QGVTSSGQSG PHLSLSSLGG QLGLSQQQAS  480
CQTRQATGNY NTSTRIEPGV PWLRPLNSHS DLMQQQEVVV GRSPPSLQQQ QQQQQHFQPP  540
HHSTTLASAN SPRSQNQKLQ VYSPSNQNLI QMQSFSRGDL GSPEWMLGSR DERSKHYGPS  600
SSAMSGSHTP LQQQGHQMLG LLDNTSTIHH HQAGDDSGLA PGGGGGGGTR QCGSSTQAAA  660
AGGHAAPAME FLQHGIIHPT TTESNTAPDT NNNNNNDEKN KKEKSPELKV YSHELEALRS  720
YEAGSSIYDS HPLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-282533271084squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310327KRSCRKRLADHNRRRRKP
2636648SGLAPGGGGGGGT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-50squamosa promoter binding protein-like 8