PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0046s0038.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CAMTA
Protein Properties Length: 1219aa    MW: 133883 Da    PI: 6.7534
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0046s0038.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.42.6e-53361523117
                  CG-1   3 kekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 
                           + ++rwl++ e+++iL n+ k+ ++l   ++ +p sgs++L++rk +ryfrkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+e
  Sphfalx0046s0038.2.p  36 EAQSRWLRPLEVCEILSNYGKYGFKLnpVPPVKPCSGSMFLFDRKTLRYFRKDGHNWRKKKDGKTVREAHERLKTGSVDVLHCYYAHGE 124
                           459******************9998866899********************************************************** PP

                  CG-1  90 enptfqrrcywlLeeelekivlvhylev 117
                           +n+ fqrrcyw+L+ +le+ivlvhy+ev
  Sphfalx0046s0038.2.p 125 DNSCFQRRCYWMLDPALEHIVLVHYREV 152
                           **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.69830158IPR005559CG-1 DNA-binding domain
SMARTSM010763.8E-7233153IPR005559CG-1 DNA-binding domain
PfamPF038597.2E-5036151IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.58E-18625711IPR014756Immunoglobulin E-set
PfamPF018333.3E-6625711IPR002909IPT domain
Gene3DG3DSA:2.60.40.109.0E-5625712IPR013783Immunoglobulin-like fold
CDDcd002042.79E-16779918No hitNo description
Gene3DG3DSA:1.25.40.203.5E-19807923IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-18810921IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.794826922IPR020683Ankyrin repeat-containing domain
PfamPF127962.7E-7831920IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.831859891IPR002110Ankyrin repeat
SMARTSM002480.0017859888IPR002110Ankyrin repeat
SMARTSM002483000898929IPR002110Ankyrin repeat
SuperFamilySSF525403.19E-710281095IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.2910441066IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.55310451074IPR000048IQ motif, EF-hand binding site
PfamPF006120.008310481065IPR000048IQ motif, EF-hand binding site
SMARTSM000150.1710671089IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.75510681092IPR000048IQ motif, EF-hand binding site
PfamPF006120.01610701089IPR000048IQ motif, EF-hand binding site
SMARTSM000152411431165IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.96811441173IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1219 aa     Download sequence    Send to blast
MEGVSENRAR LRVVTAAAQH HQQQQAEVDI RQILAEAQSR WLRPLEVCEI LSNYGKYGFK  60
LNPVPPVKPC SGSMFLFDRK TLRYFRKDGH NWRKKKDGKT VREAHERLKT GSVDVLHCYY  120
AHGEDNSCFQ RRCYWMLDPA LEHIVLVHYR EVTESSRFST MAADTTTTTH SSSSPSPSVT  180
VAGSPDVSGV GPSEQEHEDG DVVESDEVED SSSSSLLDFG LATPIQQQQP SSLLEQFAPP  240
PPPPQPSPPP GLPSGLDTKV FHSWGAPPPP PLNSSASPAS SAGLVGIEKL LNSSSSSSSS  300
SGVAPSSTSF FSQLNRQQQQ PSLLRMDYLG RSQQRESTGG LPDLLNNNNN NNPDPFLGGE  360
LLPRIQPSST TFDITGWSEL LENSQRNHAA SKNINQNIAA SGMMVGEAVY VKQESMNGSA  420
WDMLEQCITP STQRNIVESI MANSSSVEGD RGGLEVAANG QDLTFGSLIP SPKGILEALS  480
PRGLGREPQT PLEASLRAVT EEKAIRAAAE AQQRRFAGGS TRSDPQNADA LWDAKAAEVA  540
FSKLESFKNS ELGNLTKFDS FGRWMINELG RDGQNFLPSG PSQSGWSGMG PLEDQGVYDM  600
YSFSQQMQVE AGLSTPVSQD QRYSIVDFSP EWAYPAGDAK VIITGMFLRE YKSSSEDYKW  660
CCMFGELEVP AEVIGPGVLR CKAPPHALGR VSFYVTCGDR QAHSEIREFE YCSAASTAVG  720
LAATKSGLKT DEEMMLKVRL ARMLLAESST QDSGMEALPG TAEILNSVYS DDEWSYLEHL  780
AKSSGDLQAF NFQEQLLQML LKKHMQKWLL SKVQEDGKGP SILDEQGQGV FHMAAALGYD  840
WAVAPLVAAG IPINFRDVRG WTALHWAASH SREEVVIALL KARADPGTVT DPTRAFPAGQ  900
TPADLAAANG HGGIAGFLAE ANLIGRLSSM TISESPMDIA MSHIAGEKAV AKLSRRESIR  960
RSMNGGEDEL SVVESLQAVR NAAQAAALIN AAFQRHSFQK QEEDSLASIE ADEFGMTPRQ  1020
LRGLMAARTA QKFQNAFRGH HEKKQQLAAT RIQRKYRGWK QRRTFLDLRQ RVVKLQAQVR  1080
GNMVRKRLKK LLWSVGILEK AVLRWRRKGA GLRGFKSGEL SVPDKEEDDE ELLKDGRKKN  1140
EAALEKAVTR VQSMVRSRQA RAQYLRLRDG SQQQGQFSQP STPQDFTEDQ SISFQQSQHQ  1200
GRSLRSQSPL GFSDSMII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cxk_A9e-14625718995calmodulin binding transcription activator 1
2cxk_B9e-14625718995calmodulin binding transcription activator 1
2cxk_C9e-14625718995calmodulin binding transcription activator 1
2cxk_D9e-14625718995calmodulin binding transcription activator 1
2cxk_E9e-14625718995calmodulin binding transcription activator 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381994.10.0calmodulin-binding transcription activator 3-like
RefseqXP_024381996.10.0calmodulin-binding transcription activator 3-like
RefseqXP_024381997.10.0calmodulin-binding transcription activator 3-like
TrEMBLA0A2K1K5Y10.0A0A2K1K5Y1_PHYPA; Uncharacterized protein
STRINGPP1S188_92V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-121Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains