PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0045s0073.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 851aa    MW: 87066.1 Da    PI: 9.7212
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0045s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-0583105123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F r  nL+ H r H
  Sphfalx0045s0073.1.p  83 FVCEICNKGFQRDQNLQLHRRGH 105
                           89******************988 PP
2zf-C2H211.90.00069160182123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  Sphfalx0045s0073.1.p 160 WKCDKCSKRYAVQSDWKAHSKTC 182
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-682105No hitNo description
Gene3DG3DSA:3.30.160.603.0E-582105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01783105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94983105IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
SMARTSM00355260125155IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.6E-4148181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.33E-6155180No hitNo description
SMARTSM00355140160180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MTLSNITCSA SAGEASGSSG TRTTDDGNTA PRAATPATTT TTVSSGQPPG PGQKRKRNLP  60
GTPDPEAEVV ALSPKTLMAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQRSSKEII  120
RKRVYICPET SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKRYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAEESARVSA GKQYGGSGGG DMMSSSSMMM  240
QATQVGGSMS VLAGTLSLTS SPHHGNNMNL GRVSADSLAS IAAATGGGGG SGSMQRQAPL  300
APSMGGLGRL GHEAAGLSLL PPRWGQAVGN AGAAAPATGA PGPRLSLWLG SGPGPAGGLP  360
APGSQQVQLL PAASDVSSSS PFLMQPPKVA MHDGGAAGLQ PAILNPLEYD IPQAPRPTSS  420
SGLLLPMVSS GTGSLFAHLF SSAPGSTMPG LHGGSSSTNN NIPANNAGAG ASMLQQGGMG  480
ISGFSDFTAG ASQTERGGGG SATAGLSLSS SLSAGLSSCS SSAYNDGVGS VPSVSMLFNH  540
QQQQQQQQQQ HTATAQMSAT ALLQKAAQMG ATASSSSSLL RGFGGMGVPG DSSSMSFWQS  600
QQQRMQDQGR GTVELPPNKL SMVQSLQQQQ QIRRPIDISS GGGPLGVGTS MGTSNFGGSQ  660
VRPTNDHHVG GAAAAGMQDF MNSLSGGAGL FVGPLSNMPS MFGPNSGNVT GGMMQPPNNH  720
HHHHHHRMLP NDVMAHHHNN NNPYHSGGGG GPMSQGMGGQ PSSMLPGLGG STRGEDGSDR  780
FTHDFLGVGG APSGMAAAAG GMGRTLSQRD LASLASLGPG VDLGAIFNQR ENLRSVGASV  840
HSPAKSWDAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36156220367Zinc finger protein JACKDAW
5b3h_F2e-36156220367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.10.0protein indeterminate-domain 1-like isoform X1
TrEMBLA0A2K1L2D80.0A0A2K1L2D8_PHYPA; Uncharacterized protein
STRINGPP1S165_3V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-111indeterminate(ID)-domain 2