PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0044s0075.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | NF-YA | ||||||||
Protein Properties | Length: 277aa MW: 29501.9 Da PI: 7.9277 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106.7 | 2e-33 | 109 | 165 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh+hAlrR+Rg+gGrF Sphfalx0044s0075.1.p 109 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYLHESRHQHALRRARGCGGRF 165 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.0E-38 | 107 | 168 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 39.587 | 108 | 168 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.8E-28 | 110 | 165 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.0E-24 | 111 | 133 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 113 | 133 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 4.0E-24 | 142 | 165 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MQAPLPPPPD AQAAPPPRMQ AIPTHSGFEG ASVDEQQQAL PTGVLASGEY MLPHTQLELG 60 HSMARAAYPY ADPYFGGIAL AYGAQAMIHP HMLGMQQARM PLPSEMMEEE PVYVNAKQYH 120 GILRRRQSRA KAESENKLIK SRKPYLHESR HQHALRRARG CGGRFLNKKV KEGDSQANPD 180 NNRSSEGQSS QGRMVSDSQA SNPGQGMMGA QGEVAGYYPA MLAPSGSNAY QNHHLAGPIH 240 SSAFHPLPGA SDAGEGGSSG NSIVSSSPQE TAVSTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-21 | 109 | 179 | 2 | 72 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024388759.1 | 1e-119 | nuclear transcription factor Y subunit A-9-like isoform X2 | ||||
TrEMBL | A0A2K1JVK4 | 1e-116 | A0A2K1JVK4_PHYPA; Uncharacterized protein | ||||
STRING | PP1S31_299V6.1 | 1e-117 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 8e-36 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0044s0075.1.p |