PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0044s0048.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family GATA
Protein Properties Length: 389aa    MW: 41386.3 Da    PI: 8.1088
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0044s0048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.45.5e-20228262135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++CgttkTplWR+gp+g+k+LCnaCG++++k g+
  Sphfalx0044s0048.1.p 228 CAHCGTTKTPLWRNGPQGPKSLCNACGIRHKKAGR 262
                           ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-15220264No hitNo description
Gene3DG3DSA:3.30.50.101.2E-17222263IPR013088Zinc finger, NHR/GATA-type
SMARTSM004012.0E-20222274IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.747222261IPR000679Zinc finger, GATA-type
CDDcd002021.10E-14227272No hitNo description
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
PfamPF003209.4E-18228262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MLESDSYGNL PASLSWSPHE ILTPRSPSAA AAGLQCQSSC SNSCVTGVVR SMEDTSCDTS  60
FAVDCTLSLG TAASRPDIPA QLSRSGSPAL DPAWQRCSTS EQVDAATLRT HVEDRSEQVI  120
SWTSSSGCSN PNLLQEFYPQ ASVSRRGSRP GNSFQRRPWR TFSAKASEKK VVPCAGLMGM  180
QESHSYDSIP ARRSWLPSSS ASAKPSASGG NSVPPGCLQE SNNEGRVCAH CGTTKTPLWR  240
NGPQGPKSLC NACGIRHKKA GRRSAAASVS PDLPGCQSGT AVAVKGGKHK LGEELGHRYW  300
MYQGDSQPRK QRRNIFLRPS DSLLSGASCM TWQPSLLAPT PQASLKHECH SALPCTEEEV  360
MVPMNAFATD EEEGAVLLMA LSYGTVHA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.18e-16GATA transcription factor 15