PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0043s0150.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 389aa MW: 43578.4 Da PI: 5.7002

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0043s0150.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	42.8	1.3e-13	105	178	1	70
trihelix 1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 rWt+ e+l+Li+ar ++ ++k + + +W + ++++++ g++rsp q k++w++l+ y ike+ ++ Sphfalx0043s0150.1.p 105 RWTEVETLTLIAARHAESQKHLNSKsgdlSYQRKWVAMAERCKAAGMQRSPRQLKKRWNSLHSNYVHIKEWHSR 178 8***********966665555433555889*************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.458	98	166	IPR017877	Myb-like domain
Pfam	PF13837	3.5E-12	104	188	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.9E-4	105	165	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MEGPEKTGSI QRMQKLEDVN IEDTNIVDIS AGVGNLEDPK VDETKQEDVK IDDMNVDDAK 60 LEDGKMDDES DNSPIEETTI GECTDKIIRE RVKERNGVKR ERNARWTEVE TLTLIAARHA 120 ESQKHLNSKS GDLSYQRKWV AMAERCKAAG MQRSPRQLKK RWNSLHSNYV HIKEWHSRPG 180 APNFWAMDRK DRMIHKLPAY FNVVLYKALE HPSSIVLPRP VTPSSNLVTS AGEDAVDSSE 240 DNGRSAFPVI KFHASSSIPS PLPLLPPLPS TSLSLPLPQL QVPPQFRSLS QPPRIPGYAP 300 SSATIQPEDL KKVWLETFLL GFSVDPKVIE ALDLEEVTVE VLLDEGTEDG VYKVLKMVAE 360 ATGVNITVGQ QARVWHAVRQ WRDEKLKA*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MEGPEKTGSI QRMQKLEDVN IEDTNIVDIS AGVGNLEDPK VDETKQEDVK IDDMNVDDAK  60
LEDGKMDDES DNSPIEETTI GECTDKIIRE RVKERNGVKR ERNARWTEVE TLTLIAARHA  120
ESQKHLNSKS GDLSYQRKWV AMAERCKAAG MQRSPRQLKK RWNSLHSNYV HIKEWHSRPG  180
APNFWAMDRK DRMIHKLPAY FNVVLYKALE HPSSIVLPRP VTPSSNLVTS AGEDAVDSSE  240
DNGRSAFPVI KFHASSSIPS PLPLLPPLPS TSLSLPLPQL QVPPQFRSLS QPPRIPGYAP  300
SSATIQPEDL KKVWLETFLL GFSVDPKVIE ALDLEEVTVE VLLDEGTEDG VYKVLKMVAE  360
ATGVNITVGQ QARVWHAVRQ WRDEKLKA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-15	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0043s0150.1.p