PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0043s0135.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family RAV
Protein Properties Length: 1432aa    MW: 154297 Da    PI: 6.3798
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0043s0135.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.2e-14404452155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s+++GV    ++grW A+I++      ++r++lg+f t+eeAa+a+++a+ k++g
  Sphfalx0043s0135.1.p 404 SQFRGVV-PQSNGRWGAQIYEK-----HQRIWLGTFNTEEEAARAYDRAAIKFRG 452
                           6899996.6779*********3.....5************************998 PP
2B399.22.6e-31607707199
                           EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           f+k+ tpsdv+k++rlv+pk++ae++        +++ ++tl++ed sg+ W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+
  Sphfalx0043s0135.1.p 607 FDKAVTPSDVGKLNRLVIPKQHAERCfpldlsA-NSP-GQTLSFEDVSGKHWRFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDIVFFE 693
                           89***************************9853.433.459************************************************ PP

                           E-SSSEE..EEEEE-S CS
                    B3  84 ldgrsefelvvkvfrk 99 
                             +  ++el++ ++rk
  Sphfalx0043s0135.1.p 694 --RGPNQELHIDFRRK 707
                           ..4499999***9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-17404460IPR016177DNA-binding domain
CDDcd000181.16E-26404462No hitNo description
SMARTSM003803.8E-31405466IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-21405460IPR001471AP2/ERF domain
PROSITE profilePS5103220.336405460IPR001471AP2/ERF domain
PfamPF008473.3E-8406452IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.6E-41599708IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-30603708IPR015300DNA-binding pseudobarrel domain
CDDcd100175.70E-27605706No hitNo description
PfamPF023621.5E-27607707IPR003340B3 DNA binding domain
SMARTSM010193.3E-27607708IPR003340B3 DNA binding domain
PROSITE profilePS5086315.552607708IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1432 aa     Download sequence    Send to blast
MVVAAADPRL EELKKDDGCR CSCCSIMTAA AASFIQLLPL MLPCKDEKTR SKMWPSAGRW  60
PPWMSRREEQ YDDQEEEQQQ QQQQLGGPEK HKCSIAAAAN GSNGPDVTLR LSNLEVPAVL  120
AAASPGSCSD TSDVSRTSKN NNVKKNVSGG GGAGVLDDHV EVHHGPSRYW MPPTAEVSSV  180
EKRTALLGIT EKIAAALAAG AASSHHHGSS FNRSSTSVVV EPELLQESDN NSRRVESGGK  240
EATTSLPPAS SSGSPLPVAA AESGAIAPPA SSPIDHASAG RSCSTTQQTH EELQECSNLA  300
AAVEERQLLN HPNAAADQYG RADGDHWRPS WSTSGAAAWD LVRRGMSFQE QQQQTTSGGG  360
PSCCSLSAGS GEYYSDNTYN GDPQEPRGSG PRGGEHNNNK LPSSQFRGVV PQSNGRWGAQ  420
IYEKHQRIWL GTFNTEEEAA RAYDRAAIKF RGRDAMTNFR PVQDNELEAE FLLQYTKEQI  480
VEMLRRHTYD EELDHRTQSI KHSCCEATTG ALPAAAAQIG AFDARRSSSP TAAGVSPVSS  540
NENMMPETSV SRLASAAGAS ALSTDLLSTT AAIPAACKLL GSSSNNNNNN AATATTMQQQ  600
QQREHLFDKA VTPSDVGKLN RLVIPKQHAE RCFPLDLSAN SPGQTLSFED VSGKHWRFRY  660
SYWNSSQSYV LTKGWSRFVK EKKLDAGDIV FFERGPNQEL HIDFRRKQTV TMPGGGLGLG  720
GITSSSSASD HRGGLGGGPG FQGPWIGQTS CNSPFLASAA SKSAAAASFS SSIWQPFSFN  780
GSLRIPSCSS LPSNLQPPSC FQDPAGPRTL QYGNTYNQMF HSMSLPAGRG VSGSSSLHPV  840
LHDSHLEMMS DPVRSHNLST AAAVQIHHES SWAAATASSY NASMEHPWPP GLTANCVRTT  900
DYVGSSSIEL RLGQQGSHHH GELAAESSAM ARDQAPDSVN STSTTVNAQN GCVKEAHTIS  960
NNGHGTRLFG VDLERSVLNF PSLEVASLHF QTPVSKFTGQ LLPPSAAATY NLVQSVPGAS  1020
HGVLSSASAD HSTSQSLGPN LLPDLRSSSQ PAAAVVQDSA TVQFSTSEQL STPLHFHQQL  1080
LQTVGFHNKS LLDQPIELQQ SQTNQQQLAA NQRMQSSCAN LCTLSSCNSN GQKIPPTLPS  1140
MKNLANLDQV EAKFDEDAHE ARFNNGIHEE AAAVEEDCEL LTRSSSSIIE SNRKRKKTPD  1200
HDLDQSLKAA TIGLGEMSDE TDTSLTLAHS KLHPKEHLRH EQQWPSHHQE AGSVGGMMKS  1260
SPSGGGTHEQ MPKRHCSPAA ACEPLPLEIM QGFKHGIGDS PKTQSENQKF LTNIDDHDGT  1320
TTSDSNNVQI HLQESSLIHP LTHEQEVHQD STTLIKCSLD WQQSTSSDQQ QPILVPLAKF  1380
QSTQELRNQL LEVTKGHDII YKNKGGELVL LHNDQNWDFF VNSVQEMIIR R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-506037104116B3 domain-containing transcription factor NGA1
5os9_B5e-506037104116B3 domain-containing transcription factor NGA1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
111921196RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.15e-49B3 family protein