PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0043s0043.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 334aa MW: 35030.2 Da PI: 5.5172

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0043s0043.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.1	3.6e-06	307	330	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC+dC+k F++ s L+ H H Sphfalx0043s0043.2.p 307 YKCSDCDKGFTSESGLTMHKAAkH 330 9******************87666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.4E-5	307	326	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0017	307	330	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.261	307	333	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	309	330	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009294	Biological Process	DNA mediated transformation
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010162	Biological Process	seed dormancy process
GO:0005730	Cellular Component	nucleolus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MEFFGIEVPA GKPVTCSPGQ GMYLHISQAA LDEIKNVDET TAEKSNKRVV IRAQVGDEKE 60 IVLGTLSYGR CDQMPLDLVF GSDFKISHNS PDCSIYVCGY RTQAPDGELY CSDEEDEDRH 120 YLDASLAKDV TKDEAKPKSL PPATVAVSGK SNGDAAEGKT VKTAKPGKLA DPLAVAKAAK 180 LAGTALGAAA IKAVDAVQKH GNGDEDDQDM ADDDDDDVAN EANKSDEKDL KIEASKAGKK 240 RPAVDSPKVV PSEKKAKVDA AEKLGKSPTL DKKGNIPAGN TPSTKAPKGT PGVIPTTPTS 300 GKKSGDYKCS DCDKGFTSES GLTMHKAAKH PVK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	5e-22	histone deacetylase 3

Link Out ? help Back to Top
Phytozome	Sphfalx0043s0043.2.p