PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0043s0043.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 352aa MW: 36877.3 Da PI: 5.7586 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19 | 3.9e-06 | 325 | 348 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC+dC+k F++ s L+ H H Sphfalx0043s0043.1.p 325 YKCSDCDKGFTSESGLTMHKAAkH 348 9******************87666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0017 | 325 | 348 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.261 | 325 | 351 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 325 | 344 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 327 | 348 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009294 | Biological Process | DNA mediated transformation | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010162 | Biological Process | seed dormancy process | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MEFFGIEVPA GKPVTCSPGQ GMYLHISQAA LDEIKNVDET TAEKSNKRVV IRAQVGDEKE 60 IVLGTLSYGR CDQMPLDLVF GSDFKISHNS PDCSIYVCGY RTQAPDGELY CSDEEDEDRH 120 YLDASLAKDV TKDEAKPKSL PPATVAVSGK SNGDAAEGKT VKTAKPGKLA DPLAVAKAAK 180 LAGTALGAAA IKAVDAVQKH GNGDEDDQDM ADDDDDDVAN EANKSDEKDL KIEASKAGKK 240 RPAVDSPKVV PSEKKAKVDA AEKLGNKAAA EYWQSLIAAG SKGKSPTLDK KGNIPAGNTP 300 STKAPKGTPG VIPTTPTSGK KSGDYKCSDC DKGFTSESGL TMHKAAKHPV K* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 8e-22 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0043s0043.1.p |