PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0043s0001.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family bHLH
Protein Properties Length: 723aa    MW: 77493.2 Da    PI: 6.6797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0043s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16515561455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  Sphfalx0043s0001.1.p 515 VHNLSERRRRDRINEKMKALQELIPNS-----NKTDKASMLDEAIEYLKMLQ 561
                           6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.6E-19509570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-20509570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.495511560IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-17514565No hitNo description
PfamPF000101.2E-13515561IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-18517566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MSLRALDWDR GGGMLHTLDL AHDHLPLLKG KGAPQDGSYH CHLASMLGWI EDGHVEMQSQ  60
DSNGSKSHWQ SSYAPHWNGG EVVEDAVTPS KPSGPSSNKE GTLEAVVSET AAAEAPVAPN  120
INYQDDEMAS WLQYPLDDSL ERNYCSDFFG ELPSSNMQVV KESFVGQGVG RLQHMPISNM  180
EGSDAVGNKA ASAEAAMALG AGRAAGVIPQ TGAEAFSKVR TLQPLVSKWP PHSVTPHSSK  240
GFGVYPTTAS QVPPRTSLLA SRPLSAPMPP PKPQPRPGTS NLQVESARKL ACANFSHFSR  300
SAAIMKNYHQ VGVFSGMPSN MLNKQPLAKA NVEASTSTGS SIAESTTTGR SGMDSQKDIE  360
IHLQGSNSQQ QQNPGVDSSR GAVPPIPVTR EEVEPLVVEG EAVVCNTKPA TAEQDTFRMS  420
RVTGSTSLES ADKGTPQQGR QVPDAQEPTI ASSSGGSGNS AERTKEASTS NKRKAAVAEE  480
TECQSEDGDN ESADLKKPPT QGRTSTTKRT RAAEVHNLSE RRRRDRINEK MKALQELIPN  540
SNKTDKASML DEAIEYLKML QLQLHMMSMR SGMSLPPMVM PAGMQHLQIS QMTAIPPLGM  600
GMGMGMGMGM GMGMGMGLGM SMMDMAASGS GRPGMPLTGP SHKGMPVTSM SMVDVHDPRL  660
VNPNVMDPLN AYLACQHQPL QIPQPMNVDM YNAYIMQQHQ HRQHQHQQHQ QQSTNMGGGP  720
PQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1519524ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024361305.10.0uncharacterized protein LOC112275291 isoform X1
RefseqXP_024361311.10.0uncharacterized protein LOC112275291 isoform X1
RefseqXP_024361319.10.0uncharacterized protein LOC112275291 isoform X1
TrEMBLA0A2K1L0R30.0A0A2K1L0R3_PHYPA; Uncharacterized protein
STRINGPP1S84_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-39phytochrome interacting factor 3