PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0041s0042.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family AP2
Protein Properties Length: 431aa    MW: 47310.4 Da    PI: 7.7177
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0041s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.86.5e-09207253152
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                           s+y+GV +++++grW+ + +d      +    +lg++ t eeAa+  ++a  +
  Sphfalx0041s0042.1.p 207 SQYQGVVYNRNSGRWETRFWD------CgVERYLGSYSTQEEAARTFDRAVIA 253
                           78****************999......55999*************99988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-7207254IPR016177DNA-binding domain
CDDcd000185.89E-11207254No hitNo description
PROSITE profilePS5103213.511208266IPR001471AP2/ERF domain
SMARTSM003806.4E-7208272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-8208265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGEVTVEMPE LPAELGWLHI VQALAALPPP PPHGTFLHLP ASNDLPSCAW GVPMHWVPSS  60
PHEKEHCPPP SKKSRFHVPR YKLASPGNVD LVPVPEVHPT GVAIAAATCE KDLDRAKPGG  120
DIDETLALQL HLTITVQEEE KEAVAIAGTN VNRPNRAAHA AGRHARRRRR CHQGVAGNVI  180
NPINTAHSAE AGRSQSRRRR RFPPITSQYQ GVVYNRNSGR WETRFWDCGV ERYLGSYSTQ  240
EEAARTFDRA VIALNVQEFL HKINFKPAEQ YQAGLERLRH LTKNQMLKFL QRDSDGPASA  300
VLKYPFVTKM ENGTFAAHYK TGYRWGIGGY CPYVQYTGMY ATEEEAASAV YHKAMAENKI  360
HVAQDILDTR VVRMLPTTAQ QAAIDAETLG VAEGANGAIV EAGIADAILQ LQDREALRPD  420
GDGPSNNGNA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.12e-15target of early activation tagged (EAT) 3