PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0041s0029.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

HB-other

Protein Properties

Length: 278aa MW: 31298.2 Da PI: 5.4058

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0041s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.5	2.6e-14	8	60	5	53
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRa 53 ft+eq e+Le+l++++++ps + ++L + +++ +q+kvWFqNrR Sphfalx0041s0029.1.p 8 EPFTEEQMEALERLYHECPKPSSIRLQQLIWEApvlaSIEPKQIKVWFQNRRR 60 68*************************8877778************984 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.8E-6	3	69	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-13	8	67	IPR009057	Homeodomain-like
Pfam	PF00046	6.7E-12	8	59	IPR001356	Homeobox domain
CDD	cd00086	1.84E-10	10	67	No hit	No description
PROSITE profile	PS50071	13.2	10	65	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-13	10	66	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MDVSGKYEPF TEEQMEALER LYHECPKPSS IRLQQLIWEA PVLASIEPKQ IKVWFQNRRR 60 CREKQQKKKE PTRSLVSMNA KLTALNKLLV EENERLARHT SQLTLDNRML RQQLHVLPPA 120 APGPDTQHSL LLNQEIQHQM KEERVNEEDS LLNALKDGGG NEKNTPQDHL SLQPIPGQNY 180 YGVAAASTDD GCSDSVITVV GLPQNSTPQH YSPQDVHSAG RLLAVTDEMT LTEFLAKANR 240 IVVDWIQLPS MKEIGGNGVA WELCRGDQYA DDQESQS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024373357.1	5e-68	homeobox-leucine zipper protein HOX32-like isoform X2
Swissprot	Q9ZU11	6e-38	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A0Y0JAI1	5e-74	A0A0Y0JAI1_9BRYO; C3HDZ4 (Fragment)
STRING	PP1S188_95V6.1	2e-67	(Physcomitrella patens)
STRING	PP1S70_192V6.1	3e-67	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	3e-34	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0041s0029.1.p

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]