PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0040s0140.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 684aa    MW: 71250.8 Da    PI: 7.2331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0040s0140.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.8e-07429450223
                           EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                            C++Cgk F+r  nL+ H+r H
  Sphfalx0040s0140.2.p 429 FCEICGKGFKRDANLRMHMRGH 450
                           6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.09E-6424452No hitNo description
SMARTSM003550.0026428450IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.113428455IPR007087Zinc finger, C2H2
PfamPF128743.5E-4429450No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5430454IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280430450IPR007087Zinc finger, C2H2
SMARTSM0035563478511IPR015880Zinc finger, C2H2-like
SMARTSM0035533516538IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MMLHSGGQSD FRTPSSPRRE SSSGSGTSSN MATFSLLGQQ MKNFAQPSQH HQNQTSSNAS  60
SIGFPLGGSS QQSHAHSQQQ QSQSLNGGGS GVFQTLQQLS NVGQGFNQQQ QQQFSGQMAD  120
QGLQDSNTTN HLIGGGVPVQ VLMNGLAMLQ QKIQQLQALV PLLTQSVQSQ SNATVVIAQQ  180
QAASAAVSNI LAQLAAAATG MLSQQVPVVD HNQAPNLELS QLLNVGGNQS LNQFQQSGFD  240
SPLGTSLGTS LGELLGNNLL ANNFSSPEGI GRGGSGSGRE GAAAGGSGGS GLQNAGPGFS  300
NGGVVGSGHG VGSELARQKQ LGGQQVGQDG LSKGTLRVQL ETLLEKPHGS GFGVGGVDTS  360
NEAANSLVGD GVSNSAGVHE SSGMNARLEE HDPSLGAEED DGVVENLPPG SYDLVEMDAR  420
EILAEHTHFC EICGKGFKRD ANLRMHMRGH GDEYKTAAAL AKPEKASQGT VVIRPRRYSC  480
PYPGCKRNKK HRKFLPLKTM LCVKNHYRRS HCPKMLMCTK CNLKKFSVVA DLKTHEKHCG  540
RDKWQCSCGT TFSRKDKLFG HIGLFRGHTP ATPMDEMEEG NGPMDTEFSV GNDTGAGFMS  600
GSGAGGGTFG SAGGSSRATE NGLEMGLRSG TGGMGLQLGG SGISDNDTSP PTSTYNQTAM  660
LHGLFTNNFL QSSSGNTSSD GLQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-95C2H2 family protein