PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0040s0066.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 856aa MW: 92103.6 Da PI: 5.069

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0040s0066.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53	6.2e-17	602	648	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eYIk Lq Sphfalx0040s0066.1.p 602 VHNLSERRRRDRINEKMKSLQELIPNS-----NKTDKASMLDEAIEYIKTLQ 648 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.64E-20	596	656	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.489	598	647	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.18E-18	601	652	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.0E-19	602	655	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-14	602	648	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-18	604	653	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:1.10.510.10	4.1E-6	770	831	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MANLPEWRML DAVTKTTPAA AVKARGDSIH HHQRRDHLPD LASVPDQDSL EMVWMENGNV 60 ENRHFEMQGA SAEGCNAQQL SYASSWGVGQ EIEEDDDGVL PSMAQEMLEV AAANNDNNSD 120 DDETTTSFVT AAGGHQVTSP IINIQDDEMI SWLQDPPDDS LDQNYGGDLF GEPPDANIQV 180 FTDTFAGQGI TGRSSRMQPT VANSANNSGN HSFMTRAANA EAAMTLGACR AAGLIRQGAG 240 AEAFSYVRTL KQLGGTRQLS SITPSASVGL TQGLTEIQIP RRTSSPNSGP PPPILAPMLL 300 PKSPKLYGGT ASNSLPCDNS NQQMQNSGAI NFPVFARPAA LIKANLQSLN ITSVLPSNLM 360 RFKLQQGGGG GGGGGQVNLE ASTSASSSIT ELTTTNGGNG LEPQNGFLAA RSELGMQFEG 420 AGSRSSNLGV DTWSPMSRKK GEQVHAVASA AVGEEAMDCG SEPADQNACC HSNGTTVSAV 480 LASSDLGVSQ STSISKVVQE PTMISGSRGV AVQASADLGV LQQGTSIPEM QQEPTVTSAL 540 GGSSNVIALD SAKETSMVSK KKTLQAVEEV EYPIGDGEDE SLNVKKPVRA GSTAKRNRAA 600 EVHNLSERRR RDRINEKMKS LQELIPNSNK TDKASMLDEA IEYIKTLQLQ LQMMSIRSGM 660 NLPPMVLPSG IQHLQMPRMP QMAMNMGVGM GMGMGLGMGM VDMGATGSGQ GLIPVTSATG 720 PAVPHNLSVP GMRMEAHDPR FINPNLMDPR NLYLARQHLA MQIQQPMSME MYNAYILQQR 780 QQQQQQYQQQ HQQQQQQQQQ QQQQQQYQQQ HQQQQQQQQQ QQQQQQQQQE QQQNQQFQVQ 840 QAHHQSVSMM GGPPP*

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MANLPEWRML DAVTKTTPAA AVKARGDSIH HHQRRDHLPD LASVPDQDSL EMVWMENGNV  60
ENRHFEMQGA SAEGCNAQQL SYASSWGVGQ EIEEDDDGVL PSMAQEMLEV AAANNDNNSD  120
DDETTTSFVT AAGGHQVTSP IINIQDDEMI SWLQDPPDDS LDQNYGGDLF GEPPDANIQV  180
FTDTFAGQGI TGRSSRMQPT VANSANNSGN HSFMTRAANA EAAMTLGACR AAGLIRQGAG  240
AEAFSYVRTL KQLGGTRQLS SITPSASVGL TQGLTEIQIP RRTSSPNSGP PPPILAPMLL  300
PKSPKLYGGT ASNSLPCDNS NQQMQNSGAI NFPVFARPAA LIKANLQSLN ITSVLPSNLM  360
RFKLQQGGGG GGGGGQVNLE ASTSASSSIT ELTTTNGGNG LEPQNGFLAA RSELGMQFEG  420
AGSRSSNLGV DTWSPMSRKK GEQVHAVASA AVGEEAMDCG SEPADQNACC HSNGTTVSAV  480
LASSDLGVSQ STSISKVVQE PTMISGSRGV AVQASADLGV LQQGTSIPEM QQEPTVTSAL  540
GGSSNVIALD SAKETSMVSK KKTLQAVEEV EYPIGDGEDE SLNVKKPVRA GSTAKRNRAA  600
EVHNLSERRR RDRINEKMKS LQELIPNSNK TDKASMLDEA IEYIKTLQLQ LQMMSIRSGM  660
NLPPMVLPSG IQHLQMPRMP QMAMNMGVGM GMGMGLGMGM VDMGATGSGQ GLIPVTSATG  720
PAVPHNLSVP GMRMEAHDPR FINPNLMDPR NLYLARQHLA MQIQQPMSME MYNAYILQQR  780
QQQQQQYQQQ HQQQQQQQQQ QQQQQQYQQQ HQQQQQQQQQ QQQQQQQQQE QQQNQQFQVQ  840
QAHHQSVSMM GGPPP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	606	611	ERRRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-36	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Sphfalx0040s0066.1.p