PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0040s0034.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 756aa MW: 79815.4 Da PI: 5.0981

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0040s0034.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	5e-09	606	653	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Sphfalx0040s0034.1.p 606 SHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 653 8***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.37E-17	600	671	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.87E-10	600	657	No hit	No description
PROSITE profile	PS50888	15.701	602	652	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.1E-17	602	669	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-6	606	653	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-10	608	658	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 756 aa Download sequence Send to blast
MAPADVSYSS GQVELLQCPA NVGIPTASSR FSEAVIIAPV VNSSSSTLQG ASFSDGSEHR 60 SLLSGWQALE LQLSARVAEN AASGSTSAAK NSSFAQSDQE VISSSVNGSA SSLQLGRSRS 120 FSASDQQKLL GSTMTSGDWQ QLLDSASNRT SFRSSTSGNL AVPASTGQQQ ILNSSVQAGA 180 GMESLGGPGH SCTSRFVTGD SSLRAAGRAA GRGGGSVGHS AIFDSKLVFS TVACSRSWNS 240 LEQASCGISV EPTKGALALQ GVGLATSHCL EQFSSDPAFA ERAAKYSSFG NAGTYSSSQM 300 ISQPLPFMDS ERSRAAARVG NISRAPQPES EIKISRASSF PPSGVKLNVA ASSSRSHKVE 360 SVTNNPLQQD THEAAEQRQD DHAQDPDQVQ PGARSTGDQE LPGADYSGAG NQLEDEEARI 420 VDAAGATEND NMDHVSKAGQ GTTSREEDFS CTADQEHAAA CRSVESSDDT GNKRKIETSQ 480 YSDAGKETNT GYFTDSKVAD ESDEDSRPKR YKRLGEESKA PTPLPDQRLD TIKTMSGCFS 540 KQADQRSSSE NSGDSGASPS RGRNDLLTMQ KENVQPMSIS SEPLAASCKL QDYVHVCARR 600 GQATDSHSLA ERVRREKISE RMKYLQDLVP GCSKVTGKAV MLDEIINYVQ SLQHQVEVLS 660 MKLASVNPQL DYNLDCIFNK ENANLQMLQS GASSIVGPEP SSTYGLHLPL TPPHIANGLE 720 FQSLGTMDSC HLRRTISAPP TGVPSVSNLD TSDVN*

Sequence ? help Back to Top

Protein Sequence Length: 756 aa Download sequence Send to blast

MAPADVSYSS GQVELLQCPA NVGIPTASSR FSEAVIIAPV VNSSSSTLQG ASFSDGSEHR  60
SLLSGWQALE LQLSARVAEN AASGSTSAAK NSSFAQSDQE VISSSVNGSA SSLQLGRSRS  120
FSASDQQKLL GSTMTSGDWQ QLLDSASNRT SFRSSTSGNL AVPASTGQQQ ILNSSVQAGA  180
GMESLGGPGH SCTSRFVTGD SSLRAAGRAA GRGGGSVGHS AIFDSKLVFS TVACSRSWNS  240
LEQASCGISV EPTKGALALQ GVGLATSHCL EQFSSDPAFA ERAAKYSSFG NAGTYSSSQM  300
ISQPLPFMDS ERSRAAARVG NISRAPQPES EIKISRASSF PPSGVKLNVA ASSSRSHKVE  360
SVTNNPLQQD THEAAEQRQD DHAQDPDQVQ PGARSTGDQE LPGADYSGAG NQLEDEEARI  420
VDAAGATEND NMDHVSKAGQ GTTSREEDFS CTADQEHAAA CRSVESSDDT GNKRKIETSQ  480
YSDAGKETNT GYFTDSKVAD ESDEDSRPKR YKRLGEESKA PTPLPDQRLD TIKTMSGCFS  540
KQADQRSSSE NSGDSGASPS RGRNDLLTMQ KENVQPMSIS SEPLAASCKL QDYVHVCARR  600
GQATDSHSLA ERVRREKISE RMKYLQDLVP GCSKVTGKAV MLDEIINYVQ SLQHQVEVLS  660
MKLASVNPQL DYNLDCIFNK ENANLQMLQS GASSIVGPEP SSTYGLHLPL TPPHIANGLE  720
FQSLGTMDSC HLRRTISAPP TGVPSVSNLD TSDVN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	212	RAAGRAAGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0040s0034.1.p