PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0039s0094.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 278aa MW: 31534.6 Da PI: 8.6146

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0039s0094.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.9	3.7e-20	1	65	17	86
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 me+ ++++k++k+lWe++s+km+e+g+ rs+++C++kw+nl k+ykk k+++k+ s+++++++le Sphfalx0039s0094.1.p 1 MESLFNTSKSNKHLWEQISRKMKEHGYDRSATMCTDKWRNLLKEYKKAKAHDKGT-----SKVAFYKDLE 65 68899************************************************83.....4677999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	7.42E-23	1	49	No hit	No description
Pfam	PF13837	1.4E-16	4	67	No hit	No description
SuperFamily	SSF46689	9.96E-5	11	43	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MESLFNTSKS NKHLWEQISR KMKEHGYDRS ATMCTDKWRN LLKEYKKAKA HDKGTSKVAF 60 YKDLEEILGE RAKSIPYRSP AKPGMLHLST KGSPRLNLEH QLDHDGHPTT LSSGDGIGQT 120 FAPNGVPPSW SWRETNATGQ DHQSKIIVVK FGDITRKIRV DGPFESIKET IKNAFGLRTK 180 RPFWLEDDEG VVQPLSQEMA STQYSLNLDP GLLVKVCLYD ESGIPTGSTE SRTLYSDEDF 240 SNFLMRRGWQ GFREMGTFRD IYSIEDMHPG AVYQRAP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-26	1	63	22	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010248872.1	1e-101	PREDICTED: trihelix transcription factor GT-1-like
Swissprot	Q9FX53	4e-89	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A176WHM3	1e-119	A0A176WHM3_MARPO; Uncharacterized protein
TrEMBL	A0A2R6W1Q4	1e-119	A0A2R6W1Q4_MARPO; Uncharacterized protein
STRING	XP_010248872.1	1e-100	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	2e-91	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0039s0094.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]