PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0039s0047.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family CO-like
Protein Properties Length: 377aa    MW: 41262.3 Da    PI: 4.9251
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0039s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.35e-06343438
              zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                          ++C+ +++  +  +C+ +  +lC  C  + H g       H+
  Sphfalx0039s0047.1.p  3 KRCDACHDSSAVVYCRADAAYLCLGCDGKVH-GanklasrHE 43
                          79******99*****************9999.4466666676 PP
2zf-B_box23.21.4e-074589341
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           ++C+ +e+ ++   C+ +   lC +C + +H+       H++ p
  Sphfalx0039s0047.1.p 45 VWMCEVCEHAPAVVTCKADAAALCLSCDTDIHSAnplarrHERLP 89
                          689*****************************6688888898877 PP
3CCT71.61.9e-24311353143
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                           Rea+++RYkeKrk+RkFeK+irY+sRKa+AesRpRvKGrF+k+
  Sphfalx0039s0047.1.p 311 REARVMRYKEKRKNRKFEKTIRYASRKAYAESRPRVKGRFAKR 353
                           9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.8E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.499147IPR000315B-box-type zinc finger
CDDcd000211.04E-5447No hitNo description
PROSITE profilePS5011910.5374390IPR000315B-box-type zinc finger
PfamPF006435.8E-64590IPR000315B-box-type zinc finger
CDDcd000219.86E-84690No hitNo description
SMARTSM003361.7E-94890IPR000315B-box-type zinc finger
PROSITE profilePS5101716.837311353IPR010402CCT domain
PfamPF062031.2E-18311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MPKRCDACHD SSAVVYCRAD AAYLCLGCDG KVHGANKLAS RHERVWMCEV CEHAPAVVTC  60
KADAAALCLS CDTDIHSANP LARRHERLPV IPFFECPSDT KVLHINALSD AVPVITTDCS  120
ELIKDDDDDD DETSVAEAAS WILPNLKRPG EALIKDDESG LLPSPYIECD YSPKLHKDKL  180
KTEAELQEEE DLFSDVDPYL DLDYAAAMGG STTQVRADSL VPVHNPDGPR QPSLIHLQSQ  240
VASFISDLSE KNGYNHCTSS LSYSISSSSI DAGVVPDSSL SDISPSHEGS QGMEYPTPMV  300
PPGGPGETMA REARVMRYKE KRKNRKFEKT IRYASRKAYA ESRPRVKGRF AKRMDSDAES  360
MFPTVPDVSF GVVPTY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024380465.11e-130zinc finger protein CONSTANS-LIKE 4-like
TrEMBLQ4W1E91e-128Q4W1E9_PHYPA; CONSTANS-like 2
STRINGPP1S97_109V6.11e-129(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-81CONSTANS-like 4