PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0039s0014.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 457aa MW: 49094.4 Da PI: 6.2757 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34 | 5.3e-11 | 240 | 281 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N+++ Lr l+Pk + K++Ka+i Av+Y+++L Sphfalx0039s0014.1.p 240 SERKRRKKLNEGLYSLRALVPKiS------KMDKASIIGDAVNYVQEL 281 6*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.389 | 232 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-15 | 237 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-15 | 238 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-12 | 239 | 286 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-14 | 239 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-8 | 240 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 457 aa Download sequence Send to blast |
MRGGSQESAA GWLDCKSSIG SFDVLHPSVV SPSGHSQVGC INTLLSGCQC LNEHHTTIGQ 60 PHLATVTGAG GNYHLDFPAQ ESKPWLVTSK SMDPLFMLQE LSNGISMEDS KGILASFAGS 120 ASNNIPHIPS ENVKPQTMPE WNELKPVASK SLTSISISAT ELNKATAGSA RGVSKLNLKD 180 AHTPASLSLP LDNGLANDLE LNVEANWQAE SSDCSGELKK CGKARSQLAT RNGASKNLVS 240 ERKRRKKLNE GLYSLRALVP KISKMDKASI IGDAVNYVQE LKKEVEEMEN LESSNLESKC 300 CGSVGDDSGS ISMDITGEDA AGITVINLYD GNTGEPAKIA SLNADITNHK SSKMKTENPP 360 SQFCSGKKIL HVEVARLEDQ TYHLRILCQK GHGVLVQLMQ ALESLGIDVV NAHHTSFQDN 420 ILNTFVAQIK NWEMMETEEV RQKLLGVAAQ YGLVQT* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 240 | 247 | ERKRRKKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024393069.1 | 5e-76 | transcription factor bHLH35-like | ||||
Refseq | XP_024393070.1 | 5e-76 | transcription factor bHLH35-like | ||||
Refseq | XP_024393071.1 | 5e-76 | transcription factor bHLH35-like | ||||
Refseq | XP_024393072.1 | 5e-76 | transcription factor bHLH35-like | ||||
Refseq | XP_024393073.1 | 5e-76 | transcription factor bHLH35-like | ||||
Refseq | XP_024393074.1 | 5e-76 | transcription factor bHLH35-like | ||||
Refseq | XP_024393075.1 | 5e-76 | transcription factor bHLH35-like | ||||
Refseq | XP_024393076.1 | 5e-76 | transcription factor bHLH35-like | ||||
TrEMBL | A0A2K1JKZ2 | 1e-74 | A0A2K1JKZ2_PHYPA; Uncharacterized protein | ||||
TrEMBL | A9T862 | 9e-76 | A9T862_PHYPA; Predicted protein | ||||
STRING | PP1S182_7V6.3 | 2e-75 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16910.1 | 7e-27 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0039s0014.1.p |