PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0038s0079.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C2H2 | ||||||||
Protein Properties | Length: 976aa MW: 107477 Da PI: 5.3683 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00085 | 392 | 416 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ C+k+F+ L +H r H Sphfalx0038s0079.2.p 392 YVCNveGCKKRFTEGAALYTHARIH 416 99*********************99 PP | |||||||
2 | zf-C2H2 | 16.7 | 2.1e-05 | 453 | 475 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk Fs nL++H++tH Sphfalx0038s0079.2.p 453 CHfeGCGKAFSLDFNLRSHMKTH 475 9999******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.6E-7 | 392 | 416 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.41E-6 | 392 | 445 | No hit | No description |
PROSITE profile | PS50157 | 10.45 | 392 | 416 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 392 | 416 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 394 | 416 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.4E-12 | 419 | 443 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.856 | 421 | 450 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 421 | 445 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 423 | 445 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.68E-14 | 431 | 478 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-20 | 444 | 478 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.11 | 451 | 480 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0096 | 451 | 475 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 453 | 475 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.21 | 480 | 505 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 482 | 505 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 482 | 501 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 976 aa Download sequence Send to blast |
MDSPVVGFHR LVALEPVGLG RRVLERENSL MDIAAKYIEE DEYRDSSGEE GAASQESEPS 60 RSTGGKCSNG VGYAHIGRSR EYNTDLNNRV AASNGKEVVG NIVGDSENEE LGNTGEFLQN 120 ELDVGGLLGS AVAGRLPESA ENGLIDHTVE LDAENRVGKQ GAHNGDSVNL TMEGDCRVES 180 EDGKMPTDLS EKENKEGQEE EAGIRHGSAS YGDSESTRKA PNGNQVGLFV EAGDPLPGST 240 SRRRRGRPLK QSAQKSSIQT SPITPKLEEP RAVRSNRGIK RWFPGDESED SLPKRIRVRS 300 IASVCGSTTQ PIKGEDFCLE EGLKTVSAKK RGRPRKSDIH LQQQPQDENQ EGEQVPLSSG 360 KRKMGLESES SKRCCNGRNT SATSLSQKNP IYVCNVEGCK KRFTEGAALY THARIHGDRP 420 YMCHYSGCIK SFSERSKLKR HFLIHTGEKP FLCHFEGCGK AFSLDFNLRS HMKTHTGDYN 480 ECPYAGCEKR YCQEYKLRAH ITKEHSKPAR GMRKLATTGT DTVGSHIQDI TVMKKREMLA 540 VIAIQRTKVE ETREGRVNRI AELEQERERE ANELALIEQD LEKLEQKQKQ LEEGQVGSPA 600 TSVSLAEEDE DVDEEEEEDD MELSNATVGQ TSSSSEQQSH LSNLPLEYMG EGNDVVMFAH 660 KHPTADQGAR LVKSLELRID SQPEPITSLT PLLWLKGAPP RQGHHGEQPG LRPVHRSQRP 720 IQQISELQMY AKSLGGLPGT NNSDIGVRNM HEQQKGTARD GLSRGKDSDS GIEKRDGFDG 780 HVGQVDQVVE QLKGKADNDL PRGDGGAAQL DRITGKCDVD FQNHDSRNED MDQGFEQLEK 840 EETKLQNHKS EAGEQLSSGG QVFVSMNPVL LSMDHGFSPT KARFLASSEG YSSMVPCSTV 900 EQMRQEVDNS KALEAAAAAH DFVTKEQSHS TNEVLHSRDC SLSNGGSFSE QNTEQSFESS 960 AAQLFTYQEQ PRLVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 1e-31 | 391 | 501 | 8 | 122 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K1JPJ4 | 1e-147 | A0A2K1JPJ4_PHYPA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 3e-41 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0038s0079.2.p |