PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0038s0079.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C2H2
Protein Properties Length: 976aa    MW: 107477 Da    PI: 5.3683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0038s0079.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00085392416123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           y+C+   C+k+F+    L +H r H
  Sphfalx0038s0079.1.p 392 YVCNveGCKKRFTEGAALYTHARIH 416
                           99*********************99 PP
2zf-C2H216.72.1e-05453475323
                           ET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                           C+   Cgk Fs   nL++H++tH
  Sphfalx0038s0079.1.p 453 CHfeGCGKAFSLDFNLRSHMKTH 475
                           9999******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.6E-7392416IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.41E-6392445No hitNo description
PROSITE profilePS5015710.45392416IPR007087Zinc finger, C2H2
SMARTSM003550.018392416IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280394416IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-12419443IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.856421450IPR007087Zinc finger, C2H2
SMARTSM003550.015421445IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280423445IPR007087Zinc finger, C2H2
SuperFamilySSF576673.68E-14431478No hitNo description
Gene3DG3DSA:3.30.160.602.9E-20444478IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.11451480IPR007087Zinc finger, C2H2
SMARTSM003550.0096451475IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280453475IPR007087Zinc finger, C2H2
SMARTSM003550.21480505IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280482505IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-4482501IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 976 aa     Download sequence    Send to blast
MDSPVVGFHR LVALEPVGLG RRVLERENSL MDIAAKYIEE DEYRDSSGEE GAASQESEPS  60
RSTGGKCSNG VGYAHIGRSR EYNTDLNNRV AASNGKEVVG NIVGDSENEE LGNTGEFLQN  120
ELDVGGLLGS AVAGRLPESA ENGLIDHTVE LDAENRVGKQ GAHNGDSVNL TMEGDCRVES  180
EDGKMPTDLS EKENKEGQEE EAGIRHGSAS YGDSESTRKA PNGNQVGLFV EAGDPLPGST  240
SRRRRGRPLK QSAQKSSIQT SPITPKLEEP RAVRSNRGIK RWFPGDESED SLPKRIRVRS  300
IASVCGSTTQ PIKGEDFCLE EGLKTVSAKK RGRPRKSDIH LQQQPQDENQ EGEQVPLSSG  360
KRKMGLESES SKRCCNGRNT SATSLSQKNP IYVCNVEGCK KRFTEGAALY THARIHGDRP  420
YMCHYSGCIK SFSERSKLKR HFLIHTGEKP FLCHFEGCGK AFSLDFNLRS HMKTHTGDYN  480
ECPYAGCEKR YCQEYKLRAH ITKEHSKPAR GMRKLATTGT DTVGSHIQDI TVMKKREMLA  540
VIAIQRTKVE ETREGRVNRI AELEQERERE ANELALIEQD LEKLEQKQKQ LEEGQVGSPA  600
TSVSLAEEDE DVDEEEEEDD MELSNATVGQ TSSSSEQQSH LSNLPLEYMG EGNDVVMFAH  660
KHPTADQGAR LVKSLELRID SQPEPITSLT PLLWLKGAPP RQGHHGEQPG LRPVHRSQRP  720
IQQISELQMY AKSLGGLPGT NNSDIGVRNM HEQQKGTARD GLSRGKDSDS GIEKRDGFDG  780
HVGQVDQVVE QLKGKADNDL PRGDGGAAQL DRITGKCDVD FQNHDSRNED MDQGFEQLEK  840
EETKLQNHKS EAGEQLSSGG QVFVSMNPVL LSMDHGFSPT KARFLASSEG YSSMVPCSTV  900
EQMRQEVDNS KALEAAAAAH DFVTKEQSHS TNEVLHSRDC SLSNGGSFSE QNTEQSFESS  960
AAQLFTYQEQ PRLVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-313915018122PROTEIN (YY1 ZINC FINGER DOMAIN)
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1JPJ41e-147A0A2K1JPJ4_PHYPA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.23e-41C2H2 family protein