PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0038s0076.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

C2H2

Protein Properties

Length: 485aa MW: 53481.2 Da PI: 7.7581

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0038s0076.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.5e-06	314	333	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ Sphfalx0038s0076.1.p 314 FSCHICSKTFNRYNNLQMHM 333 89*****************9 PP
2	zf-C2H2	15	7.3e-05	398	420	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Sphfalx0038s0076.1.p 398 FMCRKCGKTFAVRGDWRTHEKNC 420 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.93E-5	308	336	No hit	No description
SMART	SM00355	0.18	314	336	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.637	314	341	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-4	314	333	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	316	336	IPR007087	Zinc finger, C2H2
SMART	SM00355	160	360	393	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.59E-6	377	418	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.1E-5	394	418	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	35	398	418	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.725	398	418	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	424	447	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MSWSNHRQAG ASVAVPLCLN SIPHAHPVEP LCHEWWNPHQ LALQPADHAS AARWPAAVST 60 IDHCTDIGLW PSGTATGRSC SPNFHTSIAR PESQLSTSHV TRPFHTLEDP QQQCSSSVQH 120 PNQHFYQQAQ KLYKCSQRSC SSVSSDSHGR PAALRRRPLP FLSLSPPTAD DDDDHHHQGP 180 NHAARDLQPY YRSPGSTADH AGSTSTVILS SARDSSNACQ KYSDVNDVTV ALHIGPPAAS 240 YDDYCMEAGA CRRRQDAGSS PQSGYDRNHV DTDDQSNDSS SQKIMELGVG QHLQLEAQYW 300 IPTSAQILVG PTQFSCHICS KTFNRYNNLQ MHMWGHGSQY RKGPESLRGT QPTAILRLPC 360 YCCVQGCRNN ISHPRSKSLK DFRTLQTHYK RKHGIKPFMC RKCGKTFAVR GDWRTHEKNC 420 GKLWYCTCGS DFKHKRSLKD HIRAFGHGHA ARCAGGAAGG HSCEDEDDPV MSEDDAADDA 480 DVSG*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MSWSNHRQAG ASVAVPLCLN SIPHAHPVEP LCHEWWNPHQ LALQPADHAS AARWPAAVST  60
IDHCTDIGLW PSGTATGRSC SPNFHTSIAR PESQLSTSHV TRPFHTLEDP QQQCSSSVQH  120
PNQHFYQQAQ KLYKCSQRSC SSVSSDSHGR PAALRRRPLP FLSLSPPTAD DDDDHHHQGP  180
NHAARDLQPY YRSPGSTADH AGSTSTVILS SARDSSNACQ KYSDVNDVTV ALHIGPPAAS  240
YDDYCMEAGA CRRRQDAGSS PQSGYDRNHV DTDDQSNDSS SQKIMELGVG QHLQLEAQYW  300
IPTSAQILVG PTQFSCHICS KTFNRYNNLQ MHMWGHGSQY RKGPESLRGT QPTAILRLPC  360
YCCVQGCRNN ISHPRSKSLK DFRTLQTHYK RKHGIKPFMC RKCGKTFAVR GDWRTHEKNC  420
GKLWYCTCGS DFKHKRSLKD HIRAFGHGHA ARCAGGAAGG HSCEDEDDPV MSEDDAADDA  480
DVSG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9SVY1	1e-102	ZWIP2_ARATH; Zinc finger protein WIP2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	4e-97	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0038s0076.1.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]