PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0037s0127.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 383aa MW: 41171.9 Da PI: 7.749 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 1.9e-09 | 53 | 77 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t C++G +C+F H+ Sphfalx0037s0127.2.p 53 GEKMCAYYMTTRNCSFGTSCRFDHP 77 6789********************9 PP | |||||||
2 | zf-CCCH | 37.7 | 3.5e-12 | 108 | 133 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tG+CkyG +C+F H++ Sphfalx0037s0127.2.p 108 GETVCAYYMKTGECKYGIKCRFDHPK 133 6789********************96 PP | |||||||
3 | zf-CCCH | 34.8 | 2.8e-11 | 170 | 192 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C ++ +tG CkyG++C+F+H++ Sphfalx0037s0127.2.p 170 DCVYYVKTGSCKYGASCRFNHPE 192 69*******************96 PP | |||||||
4 | zf-CCCH | 38.7 | 1.7e-12 | 245 | 271 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+ff++tG+C++G++C+F+H+p Sphfalx0037s0127.2.p 245 PGEADCSFFLKTGECSFGPTCRFNHPP 271 57899********************97 PP | |||||||
5 | zf-CCCH | 35.5 | 1.7e-11 | 304 | 326 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++tG Ck+G+ CkF H+ Sphfalx0037s0127.2.p 304 TPCAYYMKTGACKFGPVCKFDHP 326 69********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.19 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.028 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-5 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-6 | 57 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 106 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.605 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 108 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-6 | 111 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-6 | 165 | 192 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.493 | 165 | 193 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 169 | 194 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-8 | 170 | 192 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-6 | 171 | 193 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-6 | 244 | 271 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.159 | 244 | 272 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.3E-10 | 246 | 271 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 248 | 273 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 250 | 270 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.7E-6 | 300 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.07 | 300 | 328 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 303 | 327 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 303 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 305 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MLVFVCYLFA CVLLPCDCGC WLVYIAWGAP DYTKRVRPDS GGVVVGPFPQ RPGEKMCAYY 60 MTTRNCSFGT SCRFDHPTWV PVGGIANWKE VTASVTPTDP ATLPQRPGET VCAYYMKTGE 120 CKYGIKCRFD HPKERTESGS HNDQTQQAVT PVKAAAFNSK GLPIRPSEID CVYYVKTGSC 180 KYGASCRFNH PEANLAGSRA GVPLFPMGAS QSQPPYTPAP IHYQTGQECA YPSGISVVGS 240 YPQRPGEADC SFFLKTGECS FGPTCRFNHP PNRVPSVVSR PSSIAAAASV KLTLAGLPRR 300 ESETPCAYYM KTGACKFGPV CKFDHPTPGE VAAKALEAAR VEVPVMLDTN LSETSTIGLN 360 EPSVASSGND VVVETFSSAQ EV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009146600.1 | 6e-86 | PREDICTED: zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A9SK18 | 1e-109 | A9SK18_PHYPA; Predicted protein (Fragment) | ||||
STRING | Bra034744.1-P | 2e-85 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 9e-81 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0037s0127.2.p |