PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0037s0095.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

CPP

Protein Properties

Length: 1143aa MW: 122651 Da PI: 7.028

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0037s0095.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.3	1.9e-15	666	705	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCkkskClk+YCeCfaag +C ++C C++C+Nk e Sphfalx0037s0095.2.p 666 SCKRCNCKKSKCLKLYCECFAAGIYCVSSCACQECFNKPE 705 689**********************************975 PP
2	TCR	51	2.9e-16	751	789	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+CkN Sphfalx0037s0095.2.p 751 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCKNM 789 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.5E-15	665	706	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.157	666	791	IPR005172	CRC domain
Pfam	PF03638	1.7E-11	668	703	IPR005172	CRC domain
SMART	SM01114	1.6E-18	751	792	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	8.6E-12	753	789	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048444	Biological Process	floral organ morphogenesis
GO:0051302	Biological Process	regulation of cell division
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1143 aa Download sequence Send to blast
MERFATAETQ ADGHGSLGGP WLEKANCTNN PRSIMTTVNS GYLPSPCNKV LKHGDQAGPS 60 STRRAEALEE VKSKSCKVES VGDDLHLSEN APHGTQFSAM KTSEMDQKLP TCQLSGTSTS 120 SDSFKSQFAN TQEVVKASPL GGPYNSEKVS ERYEDHQARL RLYKEQAEAS DRGKSSQGFA 180 PEIVGSVPVV ISDHVSESQD RGLKRALVSP SHNEDQTQLG QDTTAMAYFL GGDQDSDQRN 240 REDDWSEDSS EGSRLSVHTT SECLKSQKGD MCEGITMNRN ILPAGGSSAL EEDHNLISEP 300 TTANAEQVVR LPHKVNSSGQ HRGFRRRCLD FDASVARGKI LDTGKKPLEI RNSGADVSPS 360 CASISPAVLC DRADETSTAT TSGFSMSINP LDGKEPLKAE SNYSPPAIGA ACLRGDGSSG 420 NKSGLLQMSG CCISGSLEPS SVSGGLGAPV CKTQDFRNCA GGNQNVNESN NQGCHPPVMP 480 SGIGLHLNSL TSSLSFKRDC HSSRIGNSEG TWASMLAAEP SKSASPKDDQ SSDVHTPLDM 540 GSDGLLLTGC QRFGPGVTSL LKNSQMGKFF PDSSLGSKSL KVDTLDFHSL DHESFAPLRG 600 SLSVVSGDTA ARGVSISEQE GMQWQQPDLL HQHEAESPEE FLESPQSLKK RKRKLHVASG 660 EKSGESCKRC NCKKSKCLKL YCECFAAGIY CVSSCACQEC FNKPEFEETV LNTRQQIESR 720 NPLAFAPKIV QSAKASPKIG EDTMDTPASA RHKRGCNCKK SLCLKKYCEC YQAGVGCSEG 780 CRCEGCKNMY GRKEGSREEG KEGDQVFTSQ EEPQGDDPIE LLNRMSGKSE QFRSTGNKNI 840 SPITPSFEHD GLGRSISRLR SGSRKRASDE HCSSTLLQQA GSRPSKSPTW FSNTIDGFQL 900 TANSQGAMEL SVDGGTESPL TTMNISRIEH LSPQWEGLAD ICTLTPLPLA PSRPTPASVT 960 TLDRAGESPR FSAQLIDSTY QGGSSATGHH DGLGRRLRRS PPRFRQPAAR SPLHLTQQNT 1020 CNENHLIHSR PSSASTHLPV EHCQGGKNSM LAISASGEDD DTPDFLKCPE VTSPLQTTIT 1080 KSGSPKQKRV TPPRHCDSRE QGPSKSVGGS VPSSSPGLRN GRKFTLQALP SLPPVTPPFS 1140 CS*

Sequence ? help Back to Top

Protein Sequence Length: 1143 aa Download sequence Send to blast

MERFATAETQ ADGHGSLGGP WLEKANCTNN PRSIMTTVNS GYLPSPCNKV LKHGDQAGPS  60
STRRAEALEE VKSKSCKVES VGDDLHLSEN APHGTQFSAM KTSEMDQKLP TCQLSGTSTS  120
SDSFKSQFAN TQEVVKASPL GGPYNSEKVS ERYEDHQARL RLYKEQAEAS DRGKSSQGFA  180
PEIVGSVPVV ISDHVSESQD RGLKRALVSP SHNEDQTQLG QDTTAMAYFL GGDQDSDQRN  240
REDDWSEDSS EGSRLSVHTT SECLKSQKGD MCEGITMNRN ILPAGGSSAL EEDHNLISEP  300
TTANAEQVVR LPHKVNSSGQ HRGFRRRCLD FDASVARGKI LDTGKKPLEI RNSGADVSPS  360
CASISPAVLC DRADETSTAT TSGFSMSINP LDGKEPLKAE SNYSPPAIGA ACLRGDGSSG  420
NKSGLLQMSG CCISGSLEPS SVSGGLGAPV CKTQDFRNCA GGNQNVNESN NQGCHPPVMP  480
SGIGLHLNSL TSSLSFKRDC HSSRIGNSEG TWASMLAAEP SKSASPKDDQ SSDVHTPLDM  540
GSDGLLLTGC QRFGPGVTSL LKNSQMGKFF PDSSLGSKSL KVDTLDFHSL DHESFAPLRG  600
SLSVVSGDTA ARGVSISEQE GMQWQQPDLL HQHEAESPEE FLESPQSLKK RKRKLHVASG  660
EKSGESCKRC NCKKSKCLKL YCECFAAGIY CVSSCACQEC FNKPEFEETV LNTRQQIESR  720
NPLAFAPKIV QSAKASPKIG EDTMDTPASA RHKRGCNCKK SLCLKKYCEC YQAGVGCSEG  780
CRCEGCKNMY GRKEGSREEG KEGDQVFTSQ EEPQGDDPIE LLNRMSGKSE QFRSTGNKNI  840
SPITPSFEHD GLGRSISRLR SGSRKRASDE HCSSTLLQQA GSRPSKSPTW FSNTIDGFQL  900
TANSQGAMEL SVDGGTESPL TTMNISRIEH LSPQWEGLAD ICTLTPLPLA PSRPTPASVT  960
TLDRAGESPR FSAQLIDSTY QGGSSATGHH DGLGRRLRRS PPRFRQPAAR SPLHLTQQNT  1020
CNENHLIHSR PSSASTHLPV EHCQGGKNSM LAISASGEDD DTPDFLKCPE VTSPLQTTIT  1080
KSGSPKQKRV TPPRHCDSRE QGPSKSVGGS VPSSSPGLRN GRKFTLQALP SLPPVTPPFS  1140
CS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	668	789	12	121	Protein lin-54 homolog
5fd3_B	1e-16	668	789	12	121	Protein lin-54 homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	647	654	LKKRKRKL
2	648	653	KKRKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-45	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Sphfalx0037s0095.2.p