PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0037s0095.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

CPP

Protein Properties

Length: 1234aa MW: 132606 Da PI: 7.0531

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0037s0095.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.2	2.1e-15	757	796	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCkkskClk+YCeCfaag +C ++C C++C+Nk e Sphfalx0037s0095.1.p 757 SCKRCNCKKSKCLKLYCECFAAGIYCVSSCACQECFNKPE 796 689**********************************975 PP
2	TCR	50.9	3.1e-16	842	880	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ag+ Cse C+Ce+CkN Sphfalx0037s0095.1.p 842 RHKRGCNCKKSLCLKKYCECYQAGVGCSEGCRCEGCKNM 880 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.5E-15	756	797	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.157	757	882	IPR005172	CRC domain
Pfam	PF03638	1.9E-11	759	794	IPR005172	CRC domain
SMART	SM01114	1.6E-18	842	883	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	9.4E-12	844	880	IPR005172	CRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048444	Biological Process	floral organ morphogenesis
GO:0051302	Biological Process	regulation of cell division
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1234 aa Download sequence Send to blast
MTGGGDAEKS KDSEVAEDTG SPDRRDPISS RSHQESPLFK YLCDLSPIKP AKAVHVAQTY 60 NELTFPPEPR IFASPRSSQR SSSDALKRVL VMERFATAET QADGHGSLGG PWLEKANCTN 120 NPRSIMTTVN SGYLPSPCNK VLKHGDQAGP SSTRRAEALE EVKSKSCKVE SVGDDLHLSE 180 NAPHGTQFSA MKTSEMDQKL PTCQLSGTST SSDSFKSQFA NTQEVVKASP LGGPYNSEKV 240 SERYEDHQAR LRLYKEQAEA SDRGKSSQGF APEIVGSVPV VISDHVSESQ DRGLKRALVS 300 PSHNEDQTQL GQDTTAMAYF LGGDQDSDQR NREDDWSEDS SEGSRLSVHT TSECLKSQKG 360 DMCEGITMNR NILPAGGSSA LEEDHNLISE PTTANAEQVV RLPHKVNSSG QHRGFRRRCL 420 DFDASVARGK ILDTGKKPLE IRNSGADVSP SCASISPAVL CDRADETSTA TTSGFSMSIN 480 PLDGKEPLKA ESNYSPPAIG AACLRGDGSS GNKSGLLQMS GCCISGSLEP SSVSGGLGAP 540 VCKTQDFRNC AGGNQNVNES NNQGCHPPVM PSGIGLHLNS LTSSLSFKRD CHSSRIGNSE 600 GTWASMLAAE PSKSASPKDD QSSDVHTPLD MGSDGLLLTG CQRFGPGVTS LLKNSQMGKF 660 FPDSSLGSKS LKVDTLDFHS LDHESFAPLR GSLSVVSGDT AARGVSISEQ EGMQWQQPDL 720 LHQHEAESPE EFLESPQSLK KRKRKLHVAS GEKSGESCKR CNCKKSKCLK LYCECFAAGI 780 YCVSSCACQE CFNKPEFEET VLNTRQQIES RNPLAFAPKI VQSAKASPKI GEDTMDTPAS 840 ARHKRGCNCK KSLCLKKYCE CYQAGVGCSE GCRCEGCKNM YGRKEGSREE GKEGDQVFTS 900 QEEPQGDDPI ELLNRMSGKS EQFRSTGNKN ISPITPSFEH DGLGRSISRL RSGSRKRASD 960 EHCSSTLLQQ AGSRPSKSPT WFSNTIDGFQ LTANSQGAME LSVDGGTESP LTTMNISRIE 1020 HLSPQWEGLA DICTLTPLPL APSRPTPASV TTLDRAGESP RFSAQLIDST YQGGSSATGH 1080 HDGLGRRLRR SPPRFRQPAA RSPLHLTQQN TCNENHLIHS RPSSASTHLP VEHCQGGKNS 1140 MLAISASGED DDTPDFLKCP EVTSPLQTTI TKSGSPKQKR VTPPRHCDSR EQGPSKSVGG 1200 SVPSSSPGLR NGRKFTLQAL PSLPPVTPPF SCS*

Sequence ? help Back to Top

Protein Sequence Length: 1234 aa Download sequence Send to blast

MTGGGDAEKS KDSEVAEDTG SPDRRDPISS RSHQESPLFK YLCDLSPIKP AKAVHVAQTY  60
NELTFPPEPR IFASPRSSQR SSSDALKRVL VMERFATAET QADGHGSLGG PWLEKANCTN  120
NPRSIMTTVN SGYLPSPCNK VLKHGDQAGP SSTRRAEALE EVKSKSCKVE SVGDDLHLSE  180
NAPHGTQFSA MKTSEMDQKL PTCQLSGTST SSDSFKSQFA NTQEVVKASP LGGPYNSEKV  240
SERYEDHQAR LRLYKEQAEA SDRGKSSQGF APEIVGSVPV VISDHVSESQ DRGLKRALVS  300
PSHNEDQTQL GQDTTAMAYF LGGDQDSDQR NREDDWSEDS SEGSRLSVHT TSECLKSQKG  360
DMCEGITMNR NILPAGGSSA LEEDHNLISE PTTANAEQVV RLPHKVNSSG QHRGFRRRCL  420
DFDASVARGK ILDTGKKPLE IRNSGADVSP SCASISPAVL CDRADETSTA TTSGFSMSIN  480
PLDGKEPLKA ESNYSPPAIG AACLRGDGSS GNKSGLLQMS GCCISGSLEP SSVSGGLGAP  540
VCKTQDFRNC AGGNQNVNES NNQGCHPPVM PSGIGLHLNS LTSSLSFKRD CHSSRIGNSE  600
GTWASMLAAE PSKSASPKDD QSSDVHTPLD MGSDGLLLTG CQRFGPGVTS LLKNSQMGKF  660
FPDSSLGSKS LKVDTLDFHS LDHESFAPLR GSLSVVSGDT AARGVSISEQ EGMQWQQPDL  720
LHQHEAESPE EFLESPQSLK KRKRKLHVAS GEKSGESCKR CNCKKSKCLK LYCECFAAGI  780
YCVSSCACQE CFNKPEFEET VLNTRQQIES RNPLAFAPKI VQSAKASPKI GEDTMDTPAS  840
ARHKRGCNCK KSLCLKKYCE CYQAGVGCSE GCRCEGCKNM YGRKEGSREE GKEGDQVFTS  900
QEEPQGDDPI ELLNRMSGKS EQFRSTGNKN ISPITPSFEH DGLGRSISRL RSGSRKRASD  960
EHCSSTLLQQ AGSRPSKSPT WFSNTIDGFQ LTANSQGAME LSVDGGTESP LTTMNISRIE  1020
HLSPQWEGLA DICTLTPLPL APSRPTPASV TTLDRAGESP RFSAQLIDST YQGGSSATGH  1080
HDGLGRRLRR SPPRFRQPAA RSPLHLTQQN TCNENHLIHS RPSSASTHLP VEHCQGGKNS  1140
MLAISASGED DDTPDFLKCP EVTSPLQTTI TKSGSPKQKR VTPPRHCDSR EQGPSKSVGG  1200
SVPSSSPGLR NGRKFTLQAL PSLPPVTPPF SCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-16	759	880	12	121	Protein lin-54 homolog
5fd3_B	1e-16	759	880	12	121	Protein lin-54 homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	738	745	LKKRKRKL
2	739	744	KKRKRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	4e-45	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Sphfalx0037s0095.1.p