PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0036s0054.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 27362.7 Da PI: 8.7956 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.7 | 7.4e-42 | 68 | 168 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r d++sslvyeA+ar+rdPvyG++g i++lqqq ++ Sphfalx0036s0054.1.p 68 PCAACKLLRRRCAQECPFSPYFSPHEPQKFACVHKIFGASNVSKMLMEVPESQRADTASSLVYEANARIRDPVYGCMGAISALQQQAQS 156 7**************************************************************************************** PP DUF260 90 lkaelallkeel 101 l+ael+++++e+ Sphfalx0036s0054.1.p 157 LQAELNAVRQEI 168 ********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.397 | 67 | 168 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-41 | 68 | 165 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MADRTGSLDR RQLVVNSSPD RGGPISPLDR RAPAAGNRMQ EVVNSVSDRR TMMSSNPGHA 60 GQTNSSTPCA ACKLLRRRCA QECPFSPYFS PHEPQKFACV HKIFGASNVS KMLMEVPESQ 120 RADTASSLVY EANARIRDPV YGCMGAISAL QQQAQSLQAE LNAVRQEIMR YRRYDNAAAV 180 GAAAASPLTT GAAVMALGYN QAAHQLQDHD RGMVSAGALS SQTTASDNYS AIPSPNSVAT 240 PEMKPERSYW SPLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-45 | 64 | 171 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-45 | 64 | 171 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024362454.1 | 2e-72 | LOB domain-containing protein 15-like | ||||
TrEMBL | A0A2R6WX81 | 5e-80 | A0A2R6WX81_MARPO; Uncharacterized protein | ||||
STRING | PP1S156_26V6.1 | 8e-72 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 5e-59 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0036s0054.1.p |