PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0036s0015.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family G2-like
Protein Properties Length: 663aa    MW: 70248.3 Da    PI: 4.3196
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0036s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.64.9e-27320374156
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                           k++++WtpeLH+rFv+aveqL G ekA P++ilelm+v++Lt+++++SHLQkYR++
  Sphfalx0036s0015.1.p 320 KAKVDWTPELHRRFVQAVEQL-GVEKAFPSRILELMGVQCLTRHNIASHLQKYRSH 374
                           6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.783317376IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-27318377IPR009057Homeodomain-like
SuperFamilySSF466899.85E-18318376IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-25320374IPR006447Myb domain, plants
PfamPF002491.1E-7323372IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MGHTDQGMKS CEEEAEAEEE ESEEIEEEVE NVIVPSCDLS QPLIFSVFES EVGSESCAVD  60
DALEVGLLSL SSSSPAAPAV VENFPNAAAE PASSSHASYH SSCVQDAVPI DECCGFELVS  120
ATSAAARSLQ DCCQEEEAAA AAGSEERGEI DVSECLDFMQ AGSSECLDSP CKPGGGEELL  180
GACEDVGEKG NRGGSWVVTD GESFSPQCTD FSKSDQSLDL SFDATQGGRG CVIDHVTASA  240
SETLDSGRGA VQDVVEEEAS LFTLLADQVT KSTTTTASGS ESGECSSGEK KEEERISSSS  300
SSSRKAGGKN AAATATGKKK AKVDWTPELH RRFVQAVEQL GVEKAFPSRI LELMGVQCLT  360
RHNIASHLQK YRSHRRHLAA REAEAASWSH ARRAAYPPSS WNRSSSCSSN SRRSSTSTAD  420
GLPYLVPLVL QHHSNNSHPP IQPRMSSSSH HPMLQQPVLR TTTMPLKVWG YPTVDHSCMH  480
LWQQQQAVNP PSFWQAPDGS YWQYPAAALQ QAPACCSSAY PHPMRVPLAT MPSSASTVSL  540
LQQEDGSSSS CCFSEDSFFA AVDDEASLPT SMFLCNSLYE EEESEDMDTG APAAAAAAAV  600
AASCSTPPSE SQLSKVILHA AISEALANPW TPPPLGLKPP SMEGVIAELQ RQGINTVSPS  660
TC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16316372157ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024379514.11e-122transcription activator GLK1-like
TrEMBLQ5IFL71e-121Q5IFL7_PHYPA; Golden 2-like protein 1
STRINGPP1S311_30V6.11e-121(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-23GBF's pro-rich region-interacting factor 1