PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0035s0103.7.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 294aa MW: 33491.2 Da PI: 8.2972 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.6 | 5.1e-26 | 46 | 125 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi+ r+em++ ++++k++k+lWe++s+km+e+g+ rsp++C++kw+nl k+ykk k ++k+ s+++ f++le Sphfalx0035s0103.7.p 46 WAQDEIKALIAYRKEMDSMFNTSKSNKHLWEQISQKMKEQGYDRSPTMCTDKWRNLLKEYKKAKVQDKGT-----SKVACFKDLE 125 ****************************************************************999973.....3456788886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-5 | 36 | 108 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.49 | 38 | 102 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.48E-5 | 41 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-5 | 42 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 5.29E-30 | 44 | 109 | No hit | No description |
Pfam | PF13837 | 1.7E-19 | 45 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 294 aa Download sequence Send to blast |
MDVVTMIVVP PQLPASQLAT AHQVLLVDTS AEDQEIKAPK KRAETWAQDE IKALIAYRKE 60 MDSMFNTSKS NKHLWEQISQ KMKEQGYDRS PTMCTDKWRN LLKEYKKAKV QDKGTSKVAC 120 FKDLEELLSD RTKSVPYRSP AKLDALQHSL KGGDRQLSGR KVVIVKFGDM IRRICVDGPF 180 ESIKESIKTS FGLRTKRPFW LEDDEGVIQP LSRDMPAGQY SINLDPGFTV KVCLYDESGR 240 MTGSTENRTL YTDEDFHEFL SRRGWSGLRE VGTFRDFDSL EELRPGAVYQ HAP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-37 | 40 | 123 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011627954.1 | 1e-109 | trihelix transcription factor GT-1 isoform X2 | ||||
Swissprot | Q9FX53 | 9e-81 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A176WHM3 | 1e-129 | A0A176WHM3_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W1Q4 | 1e-129 | A0A2R6W1Q4_MARPO; Uncharacterized protein | ||||
STRING | XP_010248872.1 | 1e-109 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.2 | 1e-103 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0035s0103.7.p |
Publications ? help Back to Top | |||
---|---|---|---|
|