PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0035s0103.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 349aa MW: 39880.1 Da PI: 7.1678 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.2 | 7e-26 | 101 | 180 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++aLi+ r+em++ ++++k++k+lWe++s+km+e+g+ rsp++C++kw+nl k+ykk k ++k+ s+++ f++le Sphfalx0035s0103.1.p 101 WAQDEIKALIAYRKEMDSMFNTSKSNKHLWEQISQKMKEQGYDRSPTMCTDKWRNLLKEYKKAKVQDKGT-----SKVACFKDLE 180 ****************************************************************999973.....3456788886 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-5 | 91 | 163 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.49 | 93 | 157 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.8E-5 | 97 | 159 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.94E-6 | 97 | 158 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 2.70E-29 | 99 | 164 | No hit | No description |
Pfam | PF13837 | 2.3E-19 | 100 | 182 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 349 aa Download sequence Send to blast |
MWLLRHLWCD GLSSQVAVLN PWSWSSGVSV IREQLFAETN SGSARNIMFE GDSRWQETPD 60 VDQVQHQLPA SQLATAHQVL LVDTSAEDQE IKAPKKRAET WAQDEIKALI AYRKEMDSMF 120 NTSKSNKHLW EQISQKMKEQ GYDRSPTMCT DKWRNLLKEY KKAKVQDKGT SKVACFKDLE 180 ELLSDRTKSV PYRSPAKLDA LQHSLKGGDR QLSGRKVVIV KFGDMIRRIC VDGPFESIKE 240 SIKTSFGLRT KRPFWLEDDE GVIQPLSRDM PAGQYSINLD PGFTVKVCLY DESGRMTGST 300 ENRTLYTDED FHEFLSRRGW SGLREVGTFR DFDSLEELRP GAVYQHAP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-36 | 95 | 178 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011627954.1 | 1e-107 | trihelix transcription factor GT-1 isoform X2 | ||||
Swissprot | Q9FX53 | 1e-79 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A176WHM3 | 1e-128 | A0A176WHM3_MARPO; Uncharacterized protein | ||||
TrEMBL | A0A2R6W1Q4 | 1e-128 | A0A2R6W1Q4_MARPO; Uncharacterized protein | ||||
STRING | XP_010248872.1 | 1e-105 | (Nelumbo nucifera) | ||||
STRING | EFJ14311 | 1e-105 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.2 | 1e-102 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0035s0103.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|