PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0035s0090.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 331aa    MW: 37281.6 Da    PI: 7.6407
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0035s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.11.5e-1069154186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           +W+++ v + +++++e+  ++ +g+l+ ++We+  ++   e g  +s kqC++k+++l+kr+k +k+ +    +e+  t+ +f++++
  Sphfalx0035s0090.1.p  69 EWSERSVGLFLDLYEEKYFDMDKGSLRSKDWEQLVERFnLESGGGKSVKQCRDKMDSLKKRHKLEKAKKAIAGAEK-CTWLWFNKMD 154
                           5*******************************96665559*************************99998764555.59******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-466129IPR001005SANT/Myb domain
PfamPF138378.5E-1567155No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVVVVMESER GMIQTPSTRV VVTTMPQQQQ HTASMMHTTT TVATSTAEES EKKPMMMAVT  60
KNGDEKREEW SERSVGLFLD LYEEKYFDMD KGSLRSKDWE QLVERFNLES GGGKSVKQCR  120
DKMDSLKKRH KLEKAKKAIA GAEKCTWLWF NKMDGLFGNN PKQHHALLSP MPTAAAAAGA  180
ASVTEEAVDT KCHVTMEPPE TTTNAAMEGG DAKNHRMMVR SWREAKKLLK ELPLSAEERG  240
KARTLLLEKK EEERLEYFDG DFEEITFCLK LLVERSSFNA SASSGSIQMD YMMATGIQHR  300
LEEILTDVIT LKRHASSDLR FVTTTKRGRG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024400336.11e-108uncharacterized protein LOC112294274
TrEMBLA0A2K1J3F71e-107A0A2K1J3F7_PHYPA; Uncharacterized protein
TrEMBLA9SQT81e-106A9SQT8_PHYPA; Predicted protein
STRINGPP1S21_282V6.11e-99(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.21e-12Trihelix family protein