PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0034s0131.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family Trihelix
Protein Properties Length: 281aa    MW: 33302.1 Da    PI: 6.8085
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0034s0131.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.45.1e-2534115186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           +W  qe+++ i++r e+e++++++k++k+lW+ ++ km+e+gf+rs+ qCk+kw+nl +ryk  +++e ++     ++cp+f++l+
  Sphfalx0034s0131.1.p  34 QWGYQETKEFIAVRAELEKDFSQTKRNKTLWQLIAGKMKEKGFHRSADQCKCKWKNLVNRYKGKETSEHDN----GKQCPFFEELD 115
                           7*****************************************************************99984....568******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9572791IPR017877Myb-like domain
CDDcd122032.59E-253398No hitNo description
PfamPF138374.0E-2334116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAMLPMQTSP DVGGGDFGSM TLGRRSKKEE RIPQWGYQET KEFIAVRAEL EKDFSQTKRN  60
KTLWQLIAGK MKEKGFHRSA DQCKCKWKNL VNRYKGKETS EHDNGKQCPF FEELDVIFKE  120
RAKSMDRMLH EVEAGARPGK KGKRGRRSSD EDSDDVDDED DSEDDRIVGR KGRRSEKGQR  180
VTAEKFRANS MQEVLEDFFH QHQQAEVQWH DAVERREQEW RIREQEWRDA MEKLEQERIT  240
REQGWREREE QRRAREEVRA QKRDELFAAL LSKLAQEDDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A4e-1129105177DNA binding protein GT-1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381970.11e-100trihelix transcription factor GT-3b-like
TrEMBLA0A176VZJ21e-105A0A176VZJ2_MARPO; Uncharacterized protein
TrEMBLA0A2R6W4061e-105A0A2R6W406_MARPO; Uncharacterized protein
STRINGPP1S285_47V6.13e-99(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.14e-33Trihelix family protein