PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0034s0039.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

SBP

Protein Properties

Length: 1336aa MW: 146317 Da PI: 5.98

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0034s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.2e-40	236	313	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+akeyhrrhkvCevhska+++ vs +qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+ Sphfalx0034s0039.1.p 236 TCQVDECTADLSKAKEYHRRHKVCEVHSKAANAQVSHSMQRFCQQCSRFHPLPEFDEGKRSCRRRLAGHNRRRRKAQP 313 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.7E-32	230	298	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.479	234	311	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.42E-37	235	316	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.1E-29	237	310	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.61E-7	1038	1203	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.0E-8	1087	1212	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.38E-6	1087	1203	No hit	No description
PROSITE profile	PS50297	8.906	1145	1220	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1336 aa Download sequence Send to blast
MDRDAGQITV GSRTFQQHQF FPSGGGAGGM QMMHSNCLSL SGDQQREVLP SASANGKQKS 60 LLQAAECVPH KVGWDSSSWS WDSVRFQAQP AAASPSRGLL QGGSAIEQHP MRHVPNENGH 120 CGSKNSAEIG FKLDSRLSVT SEQAAGNLAT TCDDEEDEEL ELRSQNFFGR EMPSHHPRNG 180 VRLSSVRRAN DCPEEEDGQL SLKLGGSLYF HTEDNIGSRN GKRCRSSSPQ QSQFPTCQVD 240 ECTADLSKAK EYHRRHKVCE VHSKAANAQV SHSMQRFCQQ CSRFHPLPEF DEGKRSCRRR 300 LAGHNRRRRK AQPDSAVAAA TAAQAGLMVE DDRPGKGPEI LSFLNILSHL QATGGSMDLA 360 NGAPNDQNLL LQVLKNADPT TSSMLKDSNR IAPSWNQLNR NLDHRVHRPE AKLAGPQSTI 420 GSSSDSAIHT CSHLSKLASP STDAFSRLLQ SSLKGKLSAV GRSAQENPVS CLGEEGPGPG 480 PLTLASSSTE AQKSQASPST RFGQPGSSVP SISQIPSTIC ARPISSVPKG PAQLPSSLAM 540 TLQQLVADQS MPKLNRSSSS ARHVIPTSEV QKLLPPHPTT EDGSAASDMC DKIQDHDVTV 600 NSTAGVVEGH SLGMVLADIK NRLSPENVSD ASHHSIDLEH PPPQHSGDVS QSGSDQQSPG 660 SSSADWEDRN HRISFKLFDR HPAEFPEGLR AQIDEWLAHR PSDLESYIKP GCVVLTVFLS 720 MPKSAWVELK EDLAASVKKL LSLCNDNFWC KGRILVQAEH QKVFVVDGDI LESIVAEPLS 780 YPYIQAVRPL AIVAGEQNTL VLKGFNFTQP GTRLCCAYQG RFIRQELSGL EQEGSRWPES 840 DATVEDLYLD DDTKIKPTAA ANVEVGVDKQ VDDDEEVEHF AASEIEKHDQ KQGEEEEEEA 900 QEPFMGSGET SLIRTEEALF QLDSVFTCNT DLRSVVGRCF VEVECGNYGG DWKPVIIADG 960 SVCAEICTLE DEIAVAASLA GAAAQRQGFQ SSDVLDCTET MRLVAEEEVT CFLHELGWFF 1020 QRSCFQDLKD PPVVDLISSR RLRLLLVFSV ERNWCAVVQK LLDILFEVNN LEAAFTKLSD 1080 VLREEVSLLH RAVQRKCRPM VELLLGYVPS SLAHANESEF SLFQRKLQFK SHWASIFRPD 1140 VNGPAGLTPL HIAANMQDSE EVVDALTSDP CQSGLHAWFN KQDDAGETPF KSALARGNLK 1200 SIQVVRMKLA HLEDVQTVSI NIPPDLPWEW TQKNRESKSR AEEILNLELP TWVVSASSGE 1260 IAELSRPATT ACKSQACRRL PRNVGSIKGH MYKPFLLSMV SLATLCVCVC LLFRAAIKLK 1320 NGPTFRWESL QSGPK*

Sequence ? help Back to Top

Protein Sequence Length: 1336 aa Download sequence Send to blast

MDRDAGQITV GSRTFQQHQF FPSGGGAGGM QMMHSNCLSL SGDQQREVLP SASANGKQKS  60
LLQAAECVPH KVGWDSSSWS WDSVRFQAQP AAASPSRGLL QGGSAIEQHP MRHVPNENGH  120
CGSKNSAEIG FKLDSRLSVT SEQAAGNLAT TCDDEEDEEL ELRSQNFFGR EMPSHHPRNG  180
VRLSSVRRAN DCPEEEDGQL SLKLGGSLYF HTEDNIGSRN GKRCRSSSPQ QSQFPTCQVD  240
ECTADLSKAK EYHRRHKVCE VHSKAANAQV SHSMQRFCQQ CSRFHPLPEF DEGKRSCRRR  300
LAGHNRRRRK AQPDSAVAAA TAAQAGLMVE DDRPGKGPEI LSFLNILSHL QATGGSMDLA  360
NGAPNDQNLL LQVLKNADPT TSSMLKDSNR IAPSWNQLNR NLDHRVHRPE AKLAGPQSTI  420
GSSSDSAIHT CSHLSKLASP STDAFSRLLQ SSLKGKLSAV GRSAQENPVS CLGEEGPGPG  480
PLTLASSSTE AQKSQASPST RFGQPGSSVP SISQIPSTIC ARPISSVPKG PAQLPSSLAM  540
TLQQLVADQS MPKLNRSSSS ARHVIPTSEV QKLLPPHPTT EDGSAASDMC DKIQDHDVTV  600
NSTAGVVEGH SLGMVLADIK NRLSPENVSD ASHHSIDLEH PPPQHSGDVS QSGSDQQSPG  660
SSSADWEDRN HRISFKLFDR HPAEFPEGLR AQIDEWLAHR PSDLESYIKP GCVVLTVFLS  720
MPKSAWVELK EDLAASVKKL LSLCNDNFWC KGRILVQAEH QKVFVVDGDI LESIVAEPLS  780
YPYIQAVRPL AIVAGEQNTL VLKGFNFTQP GTRLCCAYQG RFIRQELSGL EQEGSRWPES  840
DATVEDLYLD DDTKIKPTAA ANVEVGVDKQ VDDDEEVEHF AASEIEKHDQ KQGEEEEEEA  900
QEPFMGSGET SLIRTEEALF QLDSVFTCNT DLRSVVGRCF VEVECGNYGG DWKPVIIADG  960
SVCAEICTLE DEIAVAASLA GAAAQRQGFQ SSDVLDCTET MRLVAEEEVT CFLHELGWFF  1020
QRSCFQDLKD PPVVDLISSR RLRLLLVFSV ERNWCAVVQK LLDILFEVNN LEAAFTKLSD  1080
VLREEVSLLH RAVQRKCRPM VELLLGYVPS SLAHANESEF SLFQRKLQFK SHWASIFRPD  1140
VNGPAGLTPL HIAANMQDSE EVVDALTSDP CQSGLHAWFN KQDDAGETPF KSALARGNLK  1200
SIQVVRMKLA HLEDVQTVSI NIPPDLPWEW TQKNRESKSR AEEILNLELP TWVVSASSGE  1260
IAELSRPATT ACKSQACRRL PRNVGSIKGH MYKPFLLSMV SLATLCVCVC LLFRAAIKLK  1320
NGPTFRWESL QSGPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-31	228	310	2	84	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	8e-42	squamosa promoter-binding protein-like 12

Link Out ? help Back to Top
Phytozome	Sphfalx0034s0039.1.p