PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0034s0003.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

GATA

Protein Properties

Length: 648aa MW: 70126.1 Da PI: 5.9146

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0034s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	44.1	2.9e-14	13	47	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg +TplWR+gp ++ LCnaCG ++r kg+ Sphfalx0034s0003.1.p 13 CGHCGIATTPLWRNGPPEKPVLCNACGSRWRTKGT 47 9*************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	3.61E-10	7	49	No hit	No description
SMART	SM00401	7.5E-9	7	59	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.90E-15	12	62	No hit	No description
Pfam	PF00320	3.6E-12	13	47	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.7E-11	13	47	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	13	38	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	10.686	13	46	IPR000679	Zinc finger, GATA-type
Pfam	PF13919	4.8E-7	315	423	IPR028020	ASX homology domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 648 aa Download sequence Send to blast
MSPPRRMGKQ GPCGHCGIAT TPLWRNGPPE KPVLCNACGS RWRTKGTLLN YMPMHSGGFG 60 GVGNPEGTAR RKKGSHRLSS DPPRSHKRKE PYGGRGENRT PTPPLPLLLK DAEEELKTAS 120 SLESGVSGPD KVALFRSSPV RSDSSAVPAW VGPIPSRKRT SMVRACTSLE KLISRFQDLM 180 NESPSVSSSP ATPSESSDVM LVESKPSTMA MDVGVNSVFL QQAPMPLLQE PPGDTISFLM 240 ESAGNLKPTQ ALPHGTDTRV TDGVIVESPN GAAIFPAQMK EKATHSLKKM EVMGYLHSDQ 300 YMAPNKALLE NFPYHKRDVL QSCQSPLVFL ELKDIINFDT YTGLLTDQEQ RQLAKLVSSL 360 DISRVPESLK EMFNSEQFVG ALNNFQQLLS EGMFDSSEPG MSACILQHFQ QLLTISDLDN 420 SGWMEQSSQL QSHGKCQSGS SNFFKNKEST KDKTKRFGVP VVAVGSGSIN HSLGKLPGQS 480 EESSGEELHA ATYKQTECGS NLLPYSGLSP LRYAHGLKLG TPDIGSSPND GGITIEEGGT 540 YFTGNAVSVD DLPDIQVPGS DGMEPDLLFD LSSNILAFQE AELLQQPAWT KSKEESEPNQ 600 VENGSLIMSN IWHMDNNFSE LFWNPSCGSP GNGLPNGAVL NPGRMLI*

Sequence ? help Back to Top

Protein Sequence Length: 648 aa Download sequence Send to blast

MSPPRRMGKQ GPCGHCGIAT TPLWRNGPPE KPVLCNACGS RWRTKGTLLN YMPMHSGGFG  60
GVGNPEGTAR RKKGSHRLSS DPPRSHKRKE PYGGRGENRT PTPPLPLLLK DAEEELKTAS  120
SLESGVSGPD KVALFRSSPV RSDSSAVPAW VGPIPSRKRT SMVRACTSLE KLISRFQDLM  180
NESPSVSSSP ATPSESSDVM LVESKPSTMA MDVGVNSVFL QQAPMPLLQE PPGDTISFLM  240
ESAGNLKPTQ ALPHGTDTRV TDGVIVESPN GAAIFPAQMK EKATHSLKKM EVMGYLHSDQ  300
YMAPNKALLE NFPYHKRDVL QSCQSPLVFL ELKDIINFDT YTGLLTDQEQ RQLAKLVSSL  360
DISRVPESLK EMFNSEQFVG ALNNFQQLLS EGMFDSSEPG MSACILQHFQ QLLTISDLDN  420
SGWMEQSSQL QSHGKCQSGS SNFFKNKEST KDKTKRFGVP VVAVGSGSIN HSLGKLPGQS  480
EESSGEELHA ATYKQTECGS NLLPYSGLSP LRYAHGLKLG TPDIGSSPND GGITIEEGGT  540
YFTGNAVSVD DLPDIQVPGS DGMEPDLLFD LSSNILAFQE AELLQQPAWT KSKEESEPNQ  600
VENGSLIMSN IWHMDNNFSE LFWNPSCGSP GNGLPNGAVL NPGRMLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.1	3e-45	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Sphfalx0034s0003.1.p