PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0033s0183.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MYB
Protein Properties Length: 790aa    MW: 86887.4 Da    PI: 6.1524
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0033s0183.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.7e-14249295148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g W++ Ed  l ++v+++G  +W++Ia  +  gR +kqc++rw+++l
  Sphfalx0033s0183.1.p 249 KGQWSPREDRYLMELVERHGQQCWSLIATFLT-GRIGKQCRERWHNHL 295
                           799****************************9.*************97 PP
2Myb_DNA-binding51.42.5e-16301343145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           r+ W +eE+e lv a++ lG++ W+ Ia+ ++ gRt++ +k++w+
  Sphfalx0033s0183.1.p 301 RDGWNKEEEEALVSAHNNLGNR-WADIAKLIP-GRTENAIKNHWN 343
                           567*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.347244299IPR017930Myb domain
SuperFamilySSF466898.24E-28247342IPR009057Homeodomain-like
SMARTSM007171.2E-13248297IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-25250301IPR009057Homeodomain-like
CDDcd001672.27E-12252295No hitNo description
PfamPF139215.8E-16252312No hitNo description
PROSITE profilePS5129419.263300350IPR017930Myb domain
SMARTSM007179.3E-15300348IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-20302349IPR009057Homeodomain-like
CDDcd001672.30E-11304343No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MQLSAAEAGK NHAQQSASHY AWTGTTDVVH GTSFMGGSSA IAPAVMQLEL NNVDTQSLGC  60
SLQIQNYLGS LHPANGQPAR LLSANPNNVN RLQGLDPCLM VVGSHEQLQR RDYNYLQPLS  120
QGATDWWCRP KNGSVTVLEA LPHARGSELK NQIENQIMAA QGSAAFQQLD YSFSDHELLV  180
DAFQAADHEQ QQQQQQLTAS WEAYGKKKKR RYDAEHDVDQ LPESKQRVLL KRSASSLRAH  240
GPRHTHIIKG QWSPREDRYL MELVERHGQQ CWSLIATFLT GRIGKQCRER WHNHLRPHIK  300
RDGWNKEEEE ALVSAHNNLG NRWADIAKLI PGRTENAIKN HWNATMRRKD LRHKHRIKTK  360
MIMDDGSETS DQCVLAGVML PPPRCTVLRD YQQSKVVAQI EKNNNTSASA SSKLLEKPYE  420
ATTADCQCGR ASGQDHESHS HAGTVEDSDS SSPPQQLACE SSSPPHTTGW RNSPRSKIQM  480
EDEDEESSLT PVPYFEANLN SVDVDNIMHL LCAATHGQDE DDHHEGLGEC GTSSYGTRLA  540
AAQTGNLMLQ SAAYSAPFVN CGAMMLDSST VQQQPSCVPV WGQGVTMSNN GAYPVAVCDG  600
TGSWERGEVL NEAADGHNSG HDVLPLHQQQ KGIKCTTSCS SSPTTIQAFC KCSEEDAAQL  660
AGTTTLDQIV SESLCLHSSL PYPISEPEKA SENSTRQERM DMISSNSRNM SFNSNHTSPV  720
QQQLDSDGSF VMQNKSDSCC GSTTTDLQML ALRYPIGILG ASDLLHNLTP DASNLLLYDP  780
SPVFCNNQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-422473492104C-Myb DNA-Binding Domain
1msf_C8e-422473492104C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210KKKKRR
2206210KKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.14e-47myb domain protein 119