PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0033s0087.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family WRKY
Protein Properties Length: 495aa    MW: 55163.1 Da    PI: 9.5278
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0033s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31423481259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D y+WrKYGqK++kgs++pr+YY+C+s  +Cp++k+vers edp+++++tYegeH h+
  Sphfalx0033s0087.1.p 423 SDDYSWRKYGQKPIKGSPHPRGYYKCSSMrNCPARKHVERSLEDPSMLIVTYEGEHSHT 481
                           69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-17370420IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.9E-33411481IPR003657WRKY domain
PROSITE profilePS5081129.528417483IPR003657WRKY domain
SuperFamilySSF1182909.81E-27420482IPR003657WRKY domain
SMARTSM007748.2E-38422482IPR003657WRKY domain
PfamPF031066.5E-27424480IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEVLEYNSSS FGKRDRDYEV QVAARVGIEN ARRLLQILSH QQRTSCSSSS SQVQCGVGKD  60
DESWRGESDA AIAGVAVSKF QKVVSLLQSR TGHARFRRAP PQINPNKAGS YEYVFFESAN  120
FAQEDELIKR KDDSKTDRAE TSRPEVFNKE FTPDRAEASR PEVFNKKFKP DKAETSRREE  180
FNFVADQLPV SDRSNGANVI PTSLNDTQQI QQQQQLQIQQ QVQQLLWQHQ QLQGVTPFGY  240
FPVLQVLPLE TVSPRKKKQQ EEEEEQQQQQ QQLEGGDSMG KPNGEKTNRN CDNNSVSSGP  300
VPLSTTTKST FSKSFSQSFS QSFSKSFSVV SMDGSAAATD SNLQQQTSSL PPNRPLPQGS  360
RDHTTGGCKK KSCSGKASDE NKAGGKSCSS LHGRCHCSKR RKLRVKRTIQ VPAISSKLAD  420
IPSDDYSWRK YGQKPIKGSP HPRGYYKCSS MRNCPARKHV ERSLEDPSML IVTYEGEHSH  480
THTPSTSTAL NVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-204184841075WRKY transcription factor 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-48WRKY DNA-binding protein 74