PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0033s0073.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 941aa    MW: 102678 Da    PI: 4.9567
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0033s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.2e-08159183227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+lC++f++   C++G++C++aHg+
  Sphfalx0033s0073.1.p 159 KTSLCSYFRK-KGCRHGENCRYAHGE 183
                           9*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-11156188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7156188IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4157183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122157184IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-6159183IPR000571Zinc finger, CCCH-type
CDDcd005900.0012241305No hitNo description
PROSITE profilePS5168747.522378940IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.23E-45380406IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.23E-45438568IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.23E-45614733IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1505.8E-61632733IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138471.4E-9677737IPR025714Methyltransferase domain
CDDcd024402.14E-7679752No hitNo description
Gene3DG3DSA:3.40.50.1505.8E-61817877IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.23E-45825882IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059583.4E-6830873IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300833865IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1505.8E-61915940IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.23E-45924940IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MGASEMASVN VASFEGDEKN AAHEPKQLLE ETAASLEMKQ EEDKKDHEQE QQILAETAAA  60
EEEEPPAAAV AVASPEMKLE DHDQNHGDEE DEEVAEEEEE EEEEEVAAMV EVEEKNQLLL  120
QPKGLPETGD AVKNSMMETG NVAVEKTKSS EEAAAQRMKT SLCSYFRKKG CRHGENCRYA  180
HGESELQPRP DGTWDPTSER AKSFLATQKQ HEQQDAAGAG GVKVMIGSQP SSATTTLLQK  240
CIVHVPRGWS QDKLKSFLSD HSVPFASAKK RKAMSVCFVS FETAEQVATS AKILDGLTVQ  300
NKRLKFADVL PRAWEQKATG MSGMALDDDD DGNNNDEKTE HHKDAVLYND DDDNSSKQAE  360
SAGDEKPVLE PYRNVCQVVT PLAHLSYADQ LNVKKDDITQ VLKRLARSIR KGCPAGLLLP  420
DWLVAARDRE GLPCEFEGVI ASPIIDGYRN KCEFSIGSGP DGKRVVGFQL GTFREGVNAV  480
AEPGSCRNVS LTARMFVAAF QSFIRTSKLP VWNKQDNTGF WRMLTIREGR KPVNKGEAST  540
EMQHEIAEVM LVVQVCPTGV PEERRAKEYT QMSLALTNAA ASLSLPLTAL LVQDHVGVSN  600
AAPVDSPLHA LPIHANSAPE ELEDKPDDTP MTHIHDYIGG LRFRISPTAF FQVNSVGAER  660
LYTMAGDWAG LGPDTLLFDV CCGTGTIGLT LAHRVGMVVG IEMNASAVAD AQINASLNGI  720
SNCKFVCGKA EDVINNLLKE YVVGDLEDLV KEGESSTKTT TRATTQADAE ETVVRSELPG  780
LSVKETENGT HQIGKGTSEV GISGGQPIKQ AEEESHTTGE KRLRFSNVVA IVDPPRVGLH  840
HIVLRTLRLH KQLRQLVYIS CNPESLLANA VELCMPLEEG TAAAEKSRSR GQFKGTTNLG  900
HARRRVKTLP ASEPFRPVKA AAVDMFPHTK HCEMIMLFER *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-18633740264371Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-18633740264371Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-18633740264371Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-18633740264371Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-18633740264371Uncharacterized RNA methyltransferase SP_1029
5zq0_A4e-18633740265372Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-18633740264371Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-18633740264371Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-18633740264371Uncharacterized RNA methyltransferase SP_1029
5zth_A4e-18633740265372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387137.10.0zinc finger CCCH domain-containing protein 24-like
TrEMBLA0A2K1JZ920.0A0A2K1JZ92_PHYPA; Uncharacterized protein
STRINGPP1S145_53V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein