PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0032s0152.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | bHLH | ||||||||
Protein Properties | Length: 780aa MW: 82457.7 Da PI: 6.6603 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.2 | 1.4e-08 | 575 | 622 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sphfalx0032s0152.4.p 575 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 622 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.51E-17 | 569 | 640 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.51E-11 | 569 | 626 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 571 | 638 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.663 | 571 | 621 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-5 | 575 | 622 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-10 | 577 | 627 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 780 aa Download sequence Send to blast |
MAPPSEKSTM SCQERPSASA GHVHSSVHSC SGTPESSSLH KHSSSYPGVY MMPAALSTSL 60 SDKSMVGEES HHGNYSSSSV YEATAASESA AWQRSDNNSF ATLSKSLTAL GMSGHMTSTS 120 PRAFPSSQSN REDSSNRLGA DCCEELQDCS AGIGDHDWTQ FMNTGGASAF FSNSRPQDVL 180 MMLPSTNSIA QCSPPLVGRS HGAGNGTCSS IDGAGPAMSP RGHPAGSGHN NIANLTPTTG 240 NTWSTLNASS CQSLIMDPST GGIALQQVRL ATSQPASAEF GSDLEFPSRF SSLTGENICS 300 QRCSHSLHAL ADGRLSACGP KLACHAPSRQ HCESHDGRLS STVSASLAAL RIPSTHAAGL 360 IAGAASKHPG ECTFEGTQGK KAMVRERPWE SSAIQLNPVA EANLDDDGEP GSGLLQVESV 420 NGATDITTTA PIMTTEYDDG SAGQGLASCA EQAGENNNYR ASQATRGGLT TGLGKRKFAT 480 SQEKDNNLSG GNLASTSGRD AKLTERTGEP TAKRFKCGEG DNGNNLKAEH STSDHSGESS 540 PLESTRDDGP PKPPERHPKQ DYIHVRARRG QATDSHSLAE RVRREKISER MKFLQDLVPG 600 CNKVTGKAVM LDEIINYVQS LQHQVEFLSM KLAAVNPRLD FHLDSIFHKM LQSCASPPTT 660 LLGSDHGVHH EHPLQGEYQV PFQLAGPCGA DFRAGRAAAS EAYLRQTQSD PLCSRLAATV 720 SHGEPLSQTS SALDGELQSV VQMGFKADWS PSHGAIKYHH KHDQSFTTPW RSATSHSSY* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00660 | PBM | Transfer from Pp3c6_9520 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 2e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0032s0152.4.p |