PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0032s0096.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 621aa MW: 65939.8 Da PI: 7.2358

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0032s0096.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	5e-11	511	556	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + +++L +AveY+k+L+ Sphfalx0032s0096.2.p 511 SIAERIRRTKITERMKRLQDLVPNM----DKQTNTSDMLDEAVEYVKQLK 556 689*******************7....688**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.456	505	555	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-15	508	574	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.17E-11	509	560	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.3E-16	510	576	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-13	511	561	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-8	511	555	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MITAATLTSL LRHSSMAGMS CCIVDEELNA MLQSDEHSPA QSTLASVMAL VTTAPAGMME 60 LSSGAAEHIH TNSANFSSHY VSSSLHQGLG FSSSSGPGRQ PAAASARGLN NASAIETSSN 120 VLLQATTGVP NRSMPLQQQQ PSLWPFSNNE EQTKSDLEVK IRVTKIAAAA NARGNNNSRF 180 RPATLDAAAA ATSSGGLSSP SFSGGCLQRY HSAPSSLLQN LADEIAFSSQ QVSSPAVLLL 240 PGNKNNSDHG SNRNHDGHNH ESSSLMSHSF FSGNNNLTPI TEGGPQPMET DKLLGGASTS 300 SSHQYSQFLS PPMMEPKKQS SLVTTTSMLG VKQESMPAKR LGKKPRPPKV NLFRQSSLPA 360 DWLADLKDSI DETGPSPQIP GMTSPDESLS GGTSEETGAD HASGKASMYS RDDSFFLNDT 420 SSGGLWNSLP NSVGLIAGKR MCGVLSDTMI DTGVSGEGSL RGLGEPGTLI RHSSLPATMN 480 RPTSPGFDDL ADISVPCRAR AKRGCATHPR SIAERIRRTK ITERMKRLQD LVPNMDKQTN 540 TSDMLDEAVE YVKQLKQKVQ DLSDTVVQLR EMQEMREVKG LKAEGPLENA AIFSRSLPSP 600 DRCKVAGSSK ANRCPEEAKC *

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MITAATLTSL LRHSSMAGMS CCIVDEELNA MLQSDEHSPA QSTLASVMAL VTTAPAGMME  60
LSSGAAEHIH TNSANFSSHY VSSSLHQGLG FSSSSGPGRQ PAAASARGLN NASAIETSSN  120
VLLQATTGVP NRSMPLQQQQ PSLWPFSNNE EQTKSDLEVK IRVTKIAAAA NARGNNNSRF  180
RPATLDAAAA ATSSGGLSSP SFSGGCLQRY HSAPSSLLQN LADEIAFSSQ QVSSPAVLLL  240
PGNKNNSDHG SNRNHDGHNH ESSSLMSHSF FSGNNNLTPI TEGGPQPMET DKLLGGASTS  300
SSHQYSQFLS PPMMEPKKQS SLVTTTSMLG VKQESMPAKR LGKKPRPPKV NLFRQSSLPA  360
DWLADLKDSI DETGPSPQIP GMTSPDESLS GGTSEETGAD HASGKASMYS RDDSFFLNDT  420
SSGGLWNSLP NSVGLIAGKR MCGVLSDTMI DTGVSGEGSL RGLGEPGTLI RHSSLPATMN  480
RPTSPGFDDL ADISVPCRAR AKRGCATHPR SIAERIRRTK ITERMKRLQD LVPNMDKQTN  540
TSDMLDEAVE YVKQLKQKVQ DLSDTVVQLR EMQEMREVKG LKAEGPLENA AIFSRSLPSP  600
DRCKVAGSSK ANRCPEEAKC *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	3e-34	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0032s0096.2.p