PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0032s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | WOX | ||||||||
Protein Properties | Length: 242aa MW: 27221.9 Da PI: 8.5272 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.2e-18 | 22 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r R+t+++ q ++Le+lFe+ n +p++++ +e+A++l ++ e+++++WFqNr+a+ k+ Sphfalx0032s0013.1.p 22 RVRWTPSQIQFQILERLFEQdNGTPNKQHLKEIADELrqhgQIAETNIYNWFQNRKARAKR 82 78*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 83.4 | 2.6e-27 | 21 | 83 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r RWtP++ Q +iLe+l+++ tPnk+++++i+ eL+++G+i ++N+++WFQNrkaR +++ Sphfalx0032s0013.1.p 21 TRVRWTPSQIQFQILERLFEQDNGTPNKQHLKEIADELRQHGQIAETNIYNWFQNRKARAKRR 83 678**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.81E-16 | 13 | 87 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-14 | 18 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.268 | 18 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.0E-11 | 20 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.18E-9 | 21 | 84 | No hit | No description |
Pfam | PF00046 | 9.5E-16 | 22 | 82 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MIGEQHLAHD QMGTPNHKPP TRVRWTPSQI QFQILERLFE QDNGTPNKQH LKEIADELRQ 60 HGQIAETNIY NWFQNRKARA KRRHQQVAQR CRTHLNQAKG AQQVSMKNGD SEVDTDADSP 120 RQKQPRYDRE LTQNNSENFA HVKRISFDQG NRSGNEQSPG QIDHHKWQQV TVSSVLVEKD 180 DIKPKIPFIA GGFDPHGFAQ GATVSSTVKI GDSSKPLQAA QDVNDEGTLP GDSKASDNSH 240 Q* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A176WKA0 | 3e-42 | A0A176WKA0_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-27 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0032s0013.1.p |