PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0031s0098.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Trihelix

Protein Properties

Length: 283aa MW: 31808.4 Da PI: 9.7119

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0031s0098.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.4	1.1e-14	22	108	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+ v aL+++++e++ ++rg+lk ++Wee+s+ + ++++r+ Ck+k e+++k y+ +k e+k ++ s++ +++++e Sphfalx0031s0098.1.p 22 WCSAGVAALLDLYEERWVPMGRGNLKSKHWEEISAELakqCPQQLRRTGSHCKSKVEKMKKSYRTEKMEEEKPGAPL-SKWHWYSRME 108 9999*******************************7766789*******************9999874444.48****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.1E-17	21	110	No hit	No description
SMART	SM00595	0.0044	29	115	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MAAMGDKERD KIKEKVEYDR VWCSAGVAAL LDLYEERWVP MGRGNLKSKH WEEISAELAK 60 QCPQQLRRTG SHCKSKVEKM KKSYRTEKME EEKPGAPLSK WHWYSRMEQL MAGNGKREVS 120 RGCLTMGAAV HCSSSSLDKE TLLENAWRLP SPPPPPIGGS SQCPTRVSNP NVDDENGSFS 180 SLPPSGTVTW TTKNKECNTM RATGKPNLKR KRGHEHVCTS LAQAIQSLGE GLVKIECMRA 240 EMELKSREMF LQSQLQLASL FAKNLEEKKR RMTKYANTST NT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	2e-17	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0031s0098.1.p