PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0031s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | HRT-like | ||||||||
Protein Properties | Length: 570aa MW: 61512.7 Da PI: 10.6526 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 38.9 | 1.5e-12 | 365 | 393 | 2 | 30 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CG+ l++G +C++ P kgRKRC HK+ + Sphfalx0031s0012.1.p 365 CGFVLDNGVPCSAIPSKGRKRCTMHKDTK 393 **************************966 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MGLVSMSFNP SDDAVGAKAM SNHAGCSGHD TAPRWKREDY VHVKHDKLFS DWKVLVGPSD 60 WRDHAAGKEG VQRYRVQNLP GSHCGPGVYE LGVTGPAWLP VQQDQAGLGS NKLRSKEVVA 120 VFVGQSDNVR QRLQRYGQAG GHLEGAKSTR LFVANKNDAT VTSSSWKNEL QNGVSDQEPV 180 ARRSSRSGGE PMSPEHSSGS RSPRGPRLFT EVFALGCSVA FRWAATDSKA VAEKVEEELL 240 EAFDYAWNKG ADGTRRSRDV LAKILIGVSS SSETSSCMGD SSLQKKWLCF GVKRVGIQVA 300 VRKPSRTVHD DAQSATANYS RRKTRGDGSA LWTRAHPNAL TVGLGTKAAK VSEFTKLEIP 360 AVVRCGFVLD NGVPCSAIPS KGRKRCTMHK DTKTTRNHRR SQAQVASTSP SHSCHHNLSS 420 SRSSTTDFRR HAAHSNSSSR AAAVARSSSS KSHGALACCL PFLGHDNKSS QHSAAAASAA 480 AGKQPPEVKR RGSLSFNTWL RTSELRRSQM SGAEWTMTEH ANQLKLVSSR TRSSQTSVSG 540 GKRSSSKCSS YTSSLPTCKE SETTRAKWS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 2e-45 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0031s0012.1.p |