PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sphfalx0030s0184.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 363aa MW: 39195.7 Da PI: 7.1331 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.9 | 2.5e-39 | 38 | 98 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ ++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+rknk+++ Sphfalx0030s0184.2.p 38 PDQVMACPRCQSLNTKFCYYNNYSLTQPRHFCKNCRRYWTAGGTLRNVPVGGGCRKNKRAK 98 67899*****************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 36 | 96 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.3E-33 | 39 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.301 | 42 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 44 | 80 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
MAMEPSSSGN EEQQQQQEKK ASQLFAQRAL QERRLKPPDQ VMACPRCQSL NTKFCYYNNY 60 SLTQPRHFCK NCRRYWTAGG TLRNVPVGGG CRKNKRAKHR NSADGQSSSG TAGNTESDLF 120 GAADQQQHTR LGSSSASFFN SEEGKVFANS QEATWSQSQG ASHSGEAGLA FAHSSQGPSI 180 GQHSQPFESG IMSLGLFNSV RPDAGLSMHT SQQVPGGDLS VFFDNSTYSR AGALAALSEG 240 HGSYNQTNGE EEASSYGRGE IWRNLQQPKQ EGLWSQDQES MQGSLDLNRQ QAKSKFTAPS 300 LSPTHGLGEE SPQPAAVAWQ QSASQGGMPH YETVPDTGFW SNSGWPPVDM HALHGSGGPR 360 LL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361202.1 | 2e-86 | dof zinc finger protein 3-like | ||||
Refseq | XP_024361204.1 | 2e-86 | dof zinc finger protein 3-like | ||||
Refseq | XP_024361205.1 | 2e-86 | dof zinc finger protein 3-like | ||||
Refseq | XP_024361206.1 | 2e-86 | dof zinc finger protein 3-like | ||||
Refseq | XP_024361207.1 | 2e-86 | dof zinc finger protein 3-like | ||||
TrEMBL | A0A2K1IMF0 | 4e-85 | A0A2K1IMF0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S12_364V6.1 | 6e-86 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60200.1 | 5e-36 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sphfalx0030s0184.2.p |