PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0030s0183.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 600aa MW: 66040.9 Da PI: 6.5461

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0030s0183.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.5	6.1e-38	115	175	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+ ++cprC+s ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+rk k+ss Sphfalx0030s0183.1.p 115 PEEVMACPRCQSLNTKFCYYNNYSLTQPRHFCKNCRRYWTAGGTLRNVPVGGGCRKIKRSS 175 578899**************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	4.9E-33	117	173	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	119	173	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-22	119	167	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	121	157	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence Send to blast
MLERPVLQHG LGHRDGEMLD WNCGRRSSAV MDIDINIRQE LVMLLSGSGY GGQQQQQQQQ 60 QQQQVIKKSK ACMNVELFAQ RSSSTTTTTT AATSLLQQQQ QQKEQQRPRQ QLKPPEEVMA 120 CPRCQSLNTK FCYYNNYSLT QPRHFCKNCR RYWTAGGTLR NVPVGGGCRK IKRSSCKSST 180 TTYHHLHQHQ HQQHTAAALA ANSDHAAIIY DSPPPAGHGF IAHHRILDTF NYDNNTHAAA 240 AAAAVQWLQQ QQHTPMSSFA TILHDQSKDL ELMQVPAAAA GLSSCIDDHR LLHDAQQQQQ 300 PLQESCSIMN RLGGLFHSVQ QQHQDAAAVN SSCRHINASG QHDAAAFCSS TVGLDDFQSS 360 VNFVDNSSSR CTSRAEAGVC NYNIQLPSER RIVAAAHDEQ GNTTTTTLMP SHNDNTNSRA 420 AESWRVVLQI PKQEEQEQEE DTTTTTLQSW PPVHEENTTL QQAASLDLHS FKQDHHVKAM 480 KFFHAPSSLS LPSCTHRLGE EEEDEEEESE EAQCVEQHER PGAAAPGATA APAAATASLQ 540 HYLYSASQHH VAPGMPQCYE AVTAPPAAAD TLSSFWSNPS WSHLDLHTLC GSGSGATLL*

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence Send to blast

MLERPVLQHG LGHRDGEMLD WNCGRRSSAV MDIDINIRQE LVMLLSGSGY GGQQQQQQQQ  60
QQQQVIKKSK ACMNVELFAQ RSSSTTTTTT AATSLLQQQQ QQKEQQRPRQ QLKPPEEVMA  120
CPRCQSLNTK FCYYNNYSLT QPRHFCKNCR RYWTAGGTLR NVPVGGGCRK IKRSSCKSST  180
TTYHHLHQHQ HQQHTAAALA ANSDHAAIIY DSPPPAGHGF IAHHRILDTF NYDNNTHAAA  240
AAAAVQWLQQ QQHTPMSSFA TILHDQSKDL ELMQVPAAAA GLSSCIDDHR LLHDAQQQQQ  300
PLQESCSIMN RLGGLFHSVQ QQHQDAAAVN SSCRHINASG QHDAAAFCSS TVGLDDFQSS  360
VNFVDNSSSR CTSRAEAGVC NYNIQLPSER RIVAAAHDEQ GNTTTTTLMP SHNDNTNSRA  420
AESWRVVLQI PKQEEQEQEE DTTTTTLQSW PPVHEENTTL QQAASLDLHS FKQDHHVKAM  480
KFFHAPSSLS LPSCTHRLGE EEEDEEEESE EAQCVEQHER PGAAAPGATA APAAATASLQ  540
HYLYSASQHH VAPGMPQCYE AVTAPPAAAD TLSSFWSNPS WSHLDLHTLC GSGSGATLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-26	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Sphfalx0030s0183.1.p