PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0030s0032.1.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

NF-YC

Protein Properties

Length: 297aa MW: 33322.7 Da PI: 6.509

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0030s0032.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.2	3.8e-56	67	169	1	100
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trt Sphfalx0030s0032.1.p 67 QLQMFWQGQmseIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRT 155 89***9978889*********************************************************************** PP NF-YC 87 difdflvdivprde 100 difdflvdivprde Sphfalx0030s0032.1.p 156 DIFDFLVDIVPRDE 169 **********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.02E-36	46	161	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	6.2E-38	81	153	IPR009072	Histone-fold
Pfam	PF00808	1.7E-21	89	152	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010468	Biological Process	regulation of gene expression
GO:0048586	Biological Process	regulation of long-day photoperiodism, flowering
GO:0051247	Biological Process	positive regulation of protein metabolic process
GO:2000905	Biological Process	negative regulation of starch metabolic process
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MQYTQNPGMQ QSQYHQQPQA IASSVPEGSP AQAQQGQANY PTTVAQQQQQ QQQQLSHHHL 60 QQHQQQQLQM FWQGQMSEIE QVNDFKNHQL PLARIKKIMK ADEDVRMISA EAPVLFAKAC 120 EMFILELTLR SWIHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPRDEL INKEDVGLQG 180 MMQHRGTGIM MPVGGSPVSY EGVYYMPQQG PGLAQGGTMG APIASVLPQQ QQAMGSPSMM 240 GSAMMVARPT MAMDPSLYQQ QQQQQSYIPQ QQPMQQNLWH QQAHMANSQA GMPPNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	1e-56	75	167	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	145	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024386834.1	3e-89	nuclear transcription factor Y subunit C-2-like
Refseq	XP_024386835.1	3e-89	nuclear transcription factor Y subunit C-2-like
Swissprot	Q9FMV5	6e-70	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A2K1JXF9	7e-88	A0A2K1JXF9_PHYPA; Uncharacterized protein
STRING	PP1S51_318V6.1	1e-88	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	5e-67	nuclear factor Y, subunit C4

Link Out ? help Back to Top
Phytozome	Sphfalx0030s0032.1.p

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]