PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0030s0032.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family NF-YC
Protein Properties Length: 297aa    MW: 33322.7 Da    PI: 6.509
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0030s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.23.8e-56671691100
                 NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                           ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trt
  Sphfalx0030s0032.1.p  67 QLQMFWQGQmseIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRT 155
                           89*****9978889*************************************************************************** PP

                 NF-YC  87 difdflvdivprde 100
                           difdflvdivprde
  Sphfalx0030s0032.1.p 156 DIFDFLVDIVPRDE 169
                           ************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.02E-3646161IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.2E-3881153IPR009072Histone-fold
PfamPF008081.7E-2189152IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQYTQNPGMQ QSQYHQQPQA IASSVPEGSP AQAQQGQANY PTTVAQQQQQ QQQQLSHHHL  60
QQHQQQQLQM FWQGQMSEIE QVNDFKNHQL PLARIKKIMK ADEDVRMISA EAPVLFAKAC  120
EMFILELTLR SWIHTEENKR RTLQKNDIAA AITRTDIFDF LVDIVPRDEL INKEDVGLQG  180
MMQHRGTGIM MPVGGSPVSY EGVYYMPQQG PGLAQGGTMG APIASVLPQQ QQAMGSPSMM  240
GSAMMVARPT MAMDPSLYQQ QQQQQSYIPQ QQPMQQNLWH QQAHMANSQA GMPPNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5675167395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386834.13e-89nuclear transcription factor Y subunit C-2-like
RefseqXP_024386835.13e-89nuclear transcription factor Y subunit C-2-like
SwissprotQ9FMV56e-70NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A2K1JXF97e-88A0A2K1JXF9_PHYPA; Uncharacterized protein
STRINGPP1S51_318V6.11e-88(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.25e-67nuclear factor Y, subunit C4
Publications ? help Back to Top
  1. Hwang YH, et al.
    Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
    Plant Cell Rep., 2016. 35(4): p. 857-65
    [PMID:26754793]
  2. Liu X, et al.
    The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 12768
    [PMID:27624486]
  3. Myers ZA, et al.
    NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(9): p. e1006333
    [PMID:27685091]
  4. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  6. Qi M, et al.
    QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
    Plant Biotechnol. J., 2019. 17(1): p. 252-263
    [PMID:29878511]