PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0029s0085.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 425aa MW: 45928.9 Da PI: 7.7014 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 3.9e-10 | 97 | 121 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tC++G++C+F H+ Sphfalx0029s0085.1.p 97 GEKMCAYYMTTSTCSFGASCRFDHP 121 6789********************9 PP | |||||||
2 | zf-CCCH | 37.5 | 4e-12 | 151 | 176 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tG+CkyG +C+F H++ Sphfalx0029s0085.1.p 151 GETVCAYYMKTGECKYGIKCRFDHPK 176 6789********************96 PP | |||||||
3 | zf-CCCH | 29.3 | 1.5e-09 | 212 | 235 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 C ++ +tG CkyG++C+F+H++ Sphfalx0029s0085.1.p 212 IDCVYYCKTGSCKYGASCRFNHPE 235 5799******************96 PP | |||||||
4 | zf-CCCH | 40.7 | 4e-13 | 290 | 314 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+ff++tG+C++G++C+F+H+p Sphfalx0029s0085.1.p 290 EPDCSFFMKTGECSFGPSCRFNHPP 314 789********************97 PP | |||||||
5 | zf-CCCH | 35.9 | 1.2e-11 | 347 | 368 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++tG Ck+G++CkF H+ Sphfalx0029s0085.1.p 347 PCAYYMKTGACKFGPTCKFDHP 368 8********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0031 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.347 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-5 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-7 | 101 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.521 | 149 | 177 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 149 | 176 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 151 | 177 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 151 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-6 | 154 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.432 | 208 | 236 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 208 | 235 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 213 | 235 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 213 | 236 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 214 | 235 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-7 | 287 | 314 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.976 | 287 | 315 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-10 | 290 | 314 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 291 | 316 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 293 | 313 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 342 | 369 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.774 | 342 | 370 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.68E-6 | 346 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-5 | 347 | 367 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 347 | 368 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MAASNPQLMY SMPPQYQEPV QYQYYATEQP PPPPPPLSPY PSVYSQPPPP PLPYDHQSLV 60 GGIKRSAEDA WGDPDYTKRA RPDSWGVVAG PFPQRPGEKM CAYYMTTSTC SFGASCRFDH 120 PTWVPYGGIA NWKEVTSGTP TDPASLPQRP GETVCAYYMK TGECKYGIKC RFDHPKDRPE 180 PTSHNDQTQK VATPIRSAAL NSKGLPIRPG EIDCVYYCKT GSCKYGASCR FNHPEANMAG 240 SRPGVPLFPV GAAAAQAPYT SAPIQYQMGQ ESAYAPGTSA VGPYPQRPSE PDCSFFMKTG 300 ECSFGPSCRF NHPPNRVPSV ISRPSSIVAA AVKLSLAGLP RRESGTPCAY YMKTGACKFG 360 PTCKFDHPTP GEVAAKALEA ARVEVPVMLD ASLSENSTLV LDDQSVLPPG TDVVVETYRS 420 TQQV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9SK18 | 1e-110 | A9SK18_PHYPA; Predicted protein (Fragment) | ||||
STRING | XP_002528658.1 | 6e-84 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-78 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0029s0085.1.p |