PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0029s0070.1.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family B3
Protein Properties Length: 167aa    MW: 18510.5 Da    PI: 10.6375
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0029s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.51.5e-107743297
                          --SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3 32 esktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                           ++++t++ +  ++ ++++++    r +s r+ +++GW+eF   ngLk+gD vvF+l+  s+f   v v+
  Sphfalx0029s0070.1.p  7 IGTEVTMRGKLTEVKNMNVCFgksgRLGSLRISIGSGWREFRTTNGLKAGDYVVFTLIAPSTF--EVEVV 74
                          56678888877777777776643333334449999**********************998888..66555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.616177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-10279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-12381IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-9475No hitNo description
PfamPF023626.6E-8773IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MEYGDKIGTE VTMRGKLTEV KNMNVCFGKS GRLGSLRISI GSGWREFRTT NGLKAGDYVV  60
FTLIAPSTFE VEVVDNKACK KLKQALQDGA DHGFPPRISC LATMHRSRRK RKRATDETEA  120
INMIDNVFAQ FNLFLAQQVS PLLLPSSIGP AITLFPRNSK KISRRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-