PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sphfalx0028s0194.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
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Family | C3H | ||||||||
Protein Properties | Length: 153aa MW: 17179.5 Da PI: 7.5014 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 55 | 78 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC f++tG C++ + C+ H+ Sphfalx0028s0194.1.p 55 RALCAEFMQTGVCRFRNHCNSFHP 78 79*****************97775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.58E-16 | 4 | 53 | No hit | No description |
Pfam | PF06220 | 4.7E-10 | 5 | 38 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 8.662 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MPPHKYYCDY CDKQFYDTPA SRKRHLKGIS HQRAKKQWFD SFKEGEPLLN LDGERALCAE 60 FMQTGVCRFR NHCNSFHPNW PLPVQFGVSA AGYPVAGVVG TAWTAHVPEV DNISNFSRPE 120 LAVASVLERN LPPSLCPPPE GGYHPPPWID WG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9RMS8 | 1e-39 | A9RMS8_PHYPA; Predicted protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 2e-18 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sphfalx0028s0194.1.p |