PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0028s0130.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

Dof

Protein Properties

Length: 374aa MW: 40703.4 Da PI: 8.3112

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0028s0130.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.4	5.7e-37	64	120	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k ++cprC+s+ntkfCyynnys++qPr+fC++C+ryWt GG lrnvPvGgg+rk+ + Sphfalx0028s0130.2.p 64 KVIPCPRCQSMNTKFCYYNNYSVNQPRHFCRNCKRYWTVGGMLRNVPVGGGSRKKVR 120 6789**************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	61	117	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.8E-32	65	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.22	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MVIMYLPVMN RCEDLQLDHN LILRQGSGDL VSAEGELQSP MNIAGTRGAG ISGGCNMPHE 60 RPVKVIPCPR CQSMNTKFCY YNNYSVNQPR HFCRNCKRYW TVGGMLRNVP VGGGSRKKVR 120 STLRSQRTND HNHPHEGLQQ AADQGHSTLL NMTLQQSNLQ LLQLPSTTIQ TASTQQQQLN 180 SMLSSQAAAT GAAGTRLGSN YFRGNQLLHL QSSGQLIDPP PSNTQLVTSS TPQLPSLFQF 240 TNMDRAQQNG SYNTGSGLTK PAGADPAAAH ANNDYNMDLI DMSSNLQQDH HASTMPTLRS 300 AMYDQLHESA SATAAVTTSS DSLQMGSGIH GGRGFISNGP GFHNPETTMD HRNQHHMEFL 360 SSHVMQKPGY WGA*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MVIMYLPVMN RCEDLQLDHN LILRQGSGDL VSAEGELQSP MNIAGTRGAG ISGGCNMPHE  60
RPVKVIPCPR CQSMNTKFCY YNNYSVNQPR HFCRNCKRYW TVGGMLRNVP VGGGSRKKVR  120
STLRSQRTND HNHPHEGLQQ AADQGHSTLL NMTLQQSNLQ LLQLPSTTIQ TASTQQQQLN  180
SMLSSQAAAT GAAGTRLGSN YFRGNQLLHL QSSGQLIDPP PSNTQLVTSS TPQLPSLFQF  240
TNMDRAQQNG SYNTGSGLTK PAGADPAAAH ANNDYNMDLI DMSSNLQQDH HASTMPTLRS  300
AMYDQLHESA SATAAVTTSS DSLQMGSGIH GGRGFISNGP GFHNPETTMD HRNQHHMEFL  360
SSHVMQKPGY WGA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	9e-31	Dof family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0028s0130.2.p