PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sphfalx0028s0068.2.p

Organism

Sphagnum fallax

Taxonomic ID

53036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum

Family

bHLH

Protein Properties

Length: 641aa MW: 71067.1 Da PI: 4.8438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sphfalx0028s0068.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.4e-13	425	466	9	55
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N+++ +Lr+++Pk + K++Ka+i+ A++YI++Lq Sphfalx0028s0068.2.p 425 ERKRRKKLNDGLYTLRSVVPKiS------KMDKASIVGDAIDYIRELQ 466 9******************66......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.466	416	465	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.18E-14	418	470	No hit	No description
SuperFamily	SSF47459	2.49E-17	421	486	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.6E-16	422	471	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-17	424	483	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-10	425	466	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MMKGFGAETL NTAANVLMTA DAFDPWSSTG YTSTRGMAAA AEGNYVDELF SSFERVPPQH 60 QQLSPSSSSD QIYRKQALQF LAGYPEEIPE QQLSCHSSAD YTYSTEKWDF DLLSQFGITS 120 SMPLNAVQQI DTADHQHINT MYLQARVLQS ELETLKPLQE VHEAANCSTE RASLYENPEL 180 LSKKPSSTPA RQYCEDSFWK LHEEGIRRCA PSSNISSHDV KLQGDGTAIV SGLAQVTQNF 240 EACDPRDDQT STRHVLHWLE GLKEEQYEFP PEQRTETTKG RTSSPAKIMG TTDPADRPGL 300 ELEAISAKED KTVDRNASSG EFLYESLYDP RSSHAGGHNL PIQDVQTVSL ARYSPREEVD 360 LNSLRRGSSQ NVGTRITQTY VSVPDYTVQE DIGEVSYCEK QGVTRESNWS PAAADDVVSK 420 NLFSERKRRK KLNDGLYTLR SVVPKISKMD KASIVGDAID YIRELQKEVE DIETENSRLE 480 QKCSLTSPGR LVTTPITGPD VGDCISRRNS AASELTTVDD SHDAEIATRD EIKTSNEVII 540 RPIIDAASYQ PSQLIISPAK TLEERLSGLD GWSQMKVEII HGGGEMYHLH ANCRKRPGAV 600 LQLVKALELL ELEIVHANHV CCRDIIVNSV VVQVHPAAPQ *

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MMKGFGAETL NTAANVLMTA DAFDPWSSTG YTSTRGMAAA AEGNYVDELF SSFERVPPQH  60
QQLSPSSSSD QIYRKQALQF LAGYPEEIPE QQLSCHSSAD YTYSTEKWDF DLLSQFGITS  120
SMPLNAVQQI DTADHQHINT MYLQARVLQS ELETLKPLQE VHEAANCSTE RASLYENPEL  180
LSKKPSSTPA RQYCEDSFWK LHEEGIRRCA PSSNISSHDV KLQGDGTAIV SGLAQVTQNF  240
EACDPRDDQT STRHVLHWLE GLKEEQYEFP PEQRTETTKG RTSSPAKIMG TTDPADRPGL  300
ELEAISAKED KTVDRNASSG EFLYESLYDP RSSHAGGHNL PIQDVQTVSL ARYSPREEVD  360
LNSLRRGSSQ NVGTRITQTY VSVPDYTVQE DIGEVSYCEK QGVTRESNWS PAAADDVVSK  420
NLFSERKRRK KLNDGLYTLR SVVPKISKMD KASIVGDAID YIRELQKEVE DIETENSRLE  480
QKCSLTSPGR LVTTPITGPD VGDCISRRNS AASELTTVDD SHDAEIATRD EIKTSNEVII  540
RPIIDAASYQ PSQLIISPAK TLEERLSGLD GWSQMKVEII HGGGEMYHLH ANCRKRPGAV  600
LQLVKALELL ELEIVHANHV CCRDIIVNSV VVQVHPAAPQ *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	424	431	ERKRRKKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12860.1	3e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sphfalx0028s0068.2.p