PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0028s0045.3.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family MIKC_MADS
Protein Properties Length: 416aa    MW: 45277.7 Da    PI: 7.2055
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0028s0045.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85.2e-27959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien +nrqvt+skRrng++KKA+ELSvLCd+++ +i+fs++gkl  ys+
  Sphfalx0028s0045.3.p  9 KKIENPTNRQVTYSKRRNGLIKKAYELSVLCDIDIGLIMFSPSGKLTQYSN 59
                          68***********************************************85 PP
2K-box17.32e-071131781072
                 K-box  10 eeakaeslqqelakLkkeienLqreqRhllGed..Les.LslkeLqqLeqqLekslkkiRskKnel 72 
                           ++ +   lq+el+kL  e + Lq+  R +l ++  +++  s+++L ++e++Le++l+++R +Kn +
  Sphfalx0028s0045.3.p 113 KNYEVGVLQEELKKLTHEKDLLQQRARLILADEqiIQTvTSVQQLANMETELEQALERVRHRKNYI 178
                           55566679***************9999988765444542589*********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.114161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-32293IPR002100Transcription factor, MADS-box
CDDcd002651.03E-37273No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-26323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.6E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.11117207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGRVKLEIKK IENPTNRQVT YSKRRNGLIK KAYELSVLCD IDIGLIMFSP SGKLTQYSNC  60
SIEDVITRFA NLPLHERNKR KSENLEYLHK ALKKLGGEKD LALTQQLASG SSKNYEVGVL  120
QEELKKLTHE KDLLQQRARL ILADEQIIQT VTSVQQLANM ETELEQALER VRHRKNYITN  180
AYDQAASAIQ RQHEFMGNMQ LMAMQRGGAM AGAAQASPFL QWNMPERDQP ATLQDFMEHQ  240
SNATSLLPAQ MSREVVSNSG ASTSGFFPVP SQTELHQTLG HMSLPPGINA AAAARGLTIH  300
ELDIHDPSAS TGQYHDEKKA KLEGGGAGNT SMIFAAASSS SAGAAATAAD QVGAAAAAAA  360
DAFVSPDEQQ QHAGNSAAAP WHSAHQSHHH HHQQAYSGGS QYPAAYFTQN SDAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18194194MEF2C
5f28_B1e-18194194MEF2C
5f28_C1e-18194194MEF2C
5f28_D1e-18194194MEF2C
6byy_A1e-18190190MEF2 CHIMERA
6byy_B1e-18190190MEF2 CHIMERA
6byy_C1e-18190190MEF2 CHIMERA
6byy_D1e-18190190MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3344570.0GQ334457.1 Sphagnum subsecundum MIKC* MADS-box transcription factor (MADS3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024383906.11e-146agamous-like MADS-box protein AGL66 isoform X2
TrEMBLD3IZT90.0D3IZT9_9BRYO; MIKC* MADS-box transcription factor
STRINGPP1S90_121V6.21e-146(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.13e-40AGAMOUS-like 66